hcr:Evolution: Difference between revisions

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From ECOO157CYC  


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00970 PFAM:PF00970]
[http://pfam.janelia.org/family/PF00175 PF00175  Oxidoreductase NAD-binding domain ]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00111 PF00111  2Fe-2S iron-sulfur cluster binding domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00970 PF00970  Oxidoreductase FAD-binding domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52343 SUPERFAMILY:52343]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19370:SF35 PTHR19370:SF35]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54292 SUPERFAMILY:54292]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=63380 SUPERFAMILY:63380]
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[[EcoCyc]]
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EcoCyc:G6456
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13691
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003056
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3455
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0002960
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:31, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000008218 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000021338 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G27510 (score: 1.000; bootstrap: 52%)
  • AT1G10960 (score: 1.000; bootstrap: 52%)
  • AT1G60950 (score: 0.866)
  • AT5G10000 (score: 0.316)
  • AT4G14890 (score: 0.094)
  • AT1G32550 (score: 0.082)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000021956 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000026548 (score: 0.594)
  • ENSBTAP00000021485 (score: 0.525)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020267 (score: 1.000; bootstrap: 54%)
  • WBGene00020268 (score: 0.745)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000004410 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000015233 (score: 0.063)
  • ENSCAFP00000010109 (score: 0.055)
  • ENSCAFP00000001359 (score: 0.051)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-8497 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-235 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3197 (score: 0.651)
  • ZDB-GENE-030131-3281 (score: 0.651)
  • ZDB-CDNA-050522-225 (score: 0.066)
  • ZDB-GENE-050522-225 (score: 0.066)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036211 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10870-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000008475 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000022816 (score: 0.581)
  • ENSGALP00000025496 (score: 0.092)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000338461 (score: 1.000; bootstrap: 100%)
  • ENSP00000290512 (score: 0.563)
  • ENSP00000299498 (score: 0.519)
  • ENSP00000265287 (score: 0.086)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000013336 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000009243 (score: 0.571)
  • ENSMMUP00000025974 (score: 0.528)
  • ENSMMUP00000012531 (score: 0.085)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000001066 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000007465 (score: 0.588)
  • ENSMODP00000023845 (score: 0.371)
  • ENSMODP00000022903 (score: 0.077)

From Inparanoid:20070104

Oryza gramene

  • P11051 (score: 1.000; bootstrap: 100%)
  • Q6ZJN6 (score: 1.000; bootstrap: 100%)
  • Q40722 (score: 1.000; bootstrap: 100%)
  • Q40684 (score: 0.924)
  • O22382 (score: 0.895)
  • Q8S3J5 (score: 0.840)
  • P94044 (score: 0.824)
  • Q75LK5 (score: 0.697)
  • P27788 (score: 0.689)
  • P00228 (score: 0.665)
  • Q5N7C3 (score: 0.664)
  • P27787 (score: 0.603)
  • P27789 (score: 0.598)
  • O80429 (score: 0.579)
  • P83522 (score: 0.526)
  • Q7XVG7 (score: 0.496)
  • Q9AUK8 (score: 0.118)
  • Q850T5 (score: 0.084)
  • Q6JAD2 (score: 0.076)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000003119 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000024911 (score: 0.635)
  • ENSPTRP00000005800 (score: 0.589)
  • ENSPTRP00000031416 (score: 0.088)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000005485 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000012878 (score: 0.569)
  • ENSRNOP00000026744 (score: 0.504)
  • ENSRNOP00000039062 (score: 0.097)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YML125C (score: 1.000; bootstrap: 100%)
  • YML087C (score: 0.425)
  • YIL043C (score: 0.207)
  • YKL150W (score: 0.138)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000174874 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00023783001 (score: 1.000; bootstrap: 100%)
  • GSTENP00004448001 (score: 0.065)

From Inparanoid:20070104

Shigella flexneri

S0868

From SHIGELLACYC

E. coli O157

Z1106

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00175 Oxidoreductase NAD-binding domain

Pfam (EcoliWiki Page)

PF00111 2Fe-2S iron-sulfur cluster binding domain

Pfam (EcoliWiki Page)

PF00970 Oxidoreductase FAD-binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:52343

Panther (EcoliWiki Page)

PTHR19370:SF35

Superfamily (EcoliWiki Page)

SUPERFAMILY:54292

Superfamily (EcoliWiki Page)

SUPERFAMILY:63380

EcoCyc

EcoCyc:G6456

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13691

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003056

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3455

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002960

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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