rhlE:Evolution: Difference between revisions

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<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|rhlE}}{{Tab|Gene|rhlE}}{{Tab|Gene Product(s)|rhlE}}{{Tab|Expression|rhlE}}{{Tab On|Evolution|rhlE}}{{Tab|On One Page|rhlE}}{{TabsBottom}}
{{Tab|Quickview|rhlE}}{{Tab|Gene|rhlE}}{{Tab|Gene Product(s)|rhlE}}{{Tab|Expression|rhlE}}{{Tab On|Evolution|rhlE}}{{Tab|On One Page|rhlE}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46abae5011de2"  class=" tableEdit Evolution_homologs_table" 
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|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Gallus gallus''   
''Gallus gallus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Homo sapiens''   
''Homo sapiens''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
|-class='sortbottom'
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''E. coli'' O157
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RHLE
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From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45559.S46abae5011de2&page=45559&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415318&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415318&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF00271 PF00271  Helicase conserved C-terminal domain]
|
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF00270 PF00270  DEAD/DEAH box helicase]
|
|-
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24031:SF51 PTHR24031:SF51]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
|
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00270 PFAM:PF00270]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00270 PFAM:PF00270]
|
|
   
   
|-class='sortbottom'
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|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..F46a0718e1b175&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|
[[EcoCyc]]
|
EcoCyc:EG11235
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EcoGene]]
|
EcoGene:EG11235
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120001213
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB1217
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0002719
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45559.B46abae7cc81ac&page=45559&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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|- {{table_heading_style}}
!|Name!!URL!!Comments
 
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020229 (score: 1.000; bootstrap: 80%)
  • ENSANGP00000021826 (score: 0.156)
  • ENSANGP00000015773 (score: 0.154)
  • ENSANGP00000021335 (score: 0.138)
  • ENSANGP00000010226 (score: 0.134)
  • ENSANGP00000021062 (score: 0.091)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000005775 (score: 1.000; bootstrap: 56%)
  • ENSAPMP00000008582 (score: 0.068)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G63120 (score: 1.000; bootstrap: 62%)
  • AT1G55150 (score: 0.415)
  • AT3G01540 (score: 0.191)
  • AT3G06480 (score: 0.174)
  • AT5G14610 (score: 0.153)
  • AT1G20920 (score: 0.141)
  • AT2G47330 (score: 0.137)
  • AT2G42520 (score: 0.104)
  • AT3G09620 (score: 0.098)
  • AT3G58510 (score: 0.097)
  • AT3G58570 (score: 0.086)
  • AT1G31970 (score: 0.083)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000028682 (score: 1.000; bootstrap: 67%)
  • ENSBTAP00000028046 (score: 0.069)
  • ENSBTAP00000029071 (score: 0.061)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00030740 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006888 (score: 1.000; bootstrap: 61%)
  • WBGene00022184 (score: 0.327)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000001491 (score: 1.000; bootstrap: 63%)
  • ENSCAFP00000018897 (score: 0.067)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000015656 (score: 1.000; bootstrap: 62%)
  • ENSCINP00000002778 (score: 0.167)
  • ENSCINP00000008567 (score: 0.053)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-980526-150 (score: 1.000; bootstrap: 62%)
  • ZDB-GENE-030131-667 (score: 1.000; bootstrap: 62%)
  • ZDB-CDNA-040425-665 (score: 0.993)
  • ZDB-GENE-990415-272 (score: 0.194)
  • ZDB-GENE-030131-925 (score: 0.055)
  • ZDB-CDNA-040425-3299 (score: 0.052)
  • ZDB-CDNA-040425-1452 (score: 0.051)
  • ZDB-GENE-030131-6215 (score: 0.051)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0219351 (score: 1.000; bootstrap: 67%)
  • DDB0191329 (score: 0.063)
  • DDB0219818 (score: 0.052)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0000171 (score: 1.000; bootstrap: 60%)
  • FBgn0003970 (score: 0.144)
  • FBgn0003261 (score: 0.062)
  • FBgn0035720 (score: 0.053)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17489-PA (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000010325 (score: 1.000; bootstrap: 72%)
  • ENSGALP00000000810 (score: 0.068)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000274514 (score: 1.000; bootstrap: 61%)
  • ENSP00000352308 (score: 0.069)
  • ENSP00000310723 (score: 0.065)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000031095 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000017923 (score: 1.000; bootstrap: 62%)
  • ENSMODP00000012490 (score: 0.064)

From Inparanoid:20070104

Mus musculus

  • MGI:1920895 (score: 1.000; bootstrap: 65%)
  • MGI:1919297 (score: 0.067)

From Inparanoid:20070104

Oryza gramene

  • Q69XK1 (score: 1.000; bootstrap: 84%)
  • Q6Z4K6 (score: 0.391)
  • Q75HJ0 (score: 0.377)
  • Q5JKF3 (score: 0.069)
  • Q5VQL1 (score: 0.064)
  • Q5N7W5 (score: 0.052)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000023399 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000003378 (score: 1.000; bootstrap: 65%)
  • ENSRNOP00000047322 (score: 0.882)
  • ENSRNOP00000013012 (score: 0.160)
  • ENSRNOP00000035397 (score: 0.061)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPL119C (score: 1.000; bootstrap: 83%)
  • YOR204W (score: 0.569)
  • YNL112W (score: 0.083)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC10H111 (score: 1.000; bootstrap: 72%)
  • SPBP8B76c (score: 0.051)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000177143 (score: 1.000; bootstrap: 72%)
  • NEWSINFRUP00000161596 (score: 0.070)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00029904001 (score: 1.000; bootstrap: 86%)
  • GSTENP00027817001 (score: 0.057)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000022851 (score: 1.000; bootstrap: 64%)
  • ENSXETP00000007050 (score: 0.068)
  • ENSXETP00000021603 (score: 0.064)
  • ENSXETP00000015093 (score: 0.051)

From Inparanoid:20070104

Shigella flexneri

RHLE

From SHIGELLACYC

E. coli O157

RHLE

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00271 Helicase conserved C-terminal domain

Pfam (EcoliWiki Page)

PF00270 DEAD/DEAH box helicase

Panther (EcoliWiki Page)

PTHR24031:SF51

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

PFAM (EcoliWiki Page)

PFAM:PF00270

EcoCyc

EcoCyc:EG11235

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11235

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001213

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1217

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002719

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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