rhsD:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46aba4c255af7"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''E. coli'' O157
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Z0651
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From ECOO157CYC
 
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415030&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415030&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF05593 PFAM:PF05593]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11219:SF11 PTHR11219:SF11]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03527 PF03527  RHS protein]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF05593 PF05593  RHS Repeat]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF05593 PF05593  RHS Repeat]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF05593 PF05593  RHS Repeat]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF05593 PF05593  RHS Repeat]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF05593 PF05593  RHS Repeat]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF05593 PF05593  RHS Repeat]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF05593 PFAM:PF05593]
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[[EcoCyc]]
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EcoCyc:EG10849
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10849
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000840
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0842
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0001724
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
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[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:30, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000009783 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000039755 (score: 0.704)
  • ENSBTAP00000036826 (score: 0.689)
  • ENSBTAP00000018431 (score: 0.501)
  • ENSBTAP00000034908 (score: 0.091)
  • YP_026224 (score: 1.000; bootstrap: 100%)
  • YP_026234 (score: 0.073)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017541 (score: 1.000; bootstrap: 100%)
  • YP_026224 (score: 0.856)
  • YP_026234 (score: 0.086)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009228 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000005061 (score: 0.735)
  • ENSMODP00000005751 (score: 0.678)
  • ENSMODP00000018654 (score: 0.620)
  • YP_026224 (score: 1.000; bootstrap: 100%)
  • YP_026234 (score: 0.087)

From Inparanoid:20070104

Mus musculus

  • MGI:1345183 (score: 1.000; bootstrap: 100%)
  • MGI:2447063 (score: 0.698)
  • MGI:1345184 (score: 0.693)
  • MGI:1345185 (score: 0.609)
  • YP_026224 (score: 1.000; bootstrap: 100%)
  • YP_026234 (score: 0.080)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000003591 (score: 1.000; bootstrap: 69%)
  • YP_026224 (score: 0.848)

From Inparanoid:20070104

E. coli O157

Z0651

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11219:SF11

Pfam (EcoliWiki Page)

PF03527 RHS protein

Pfam (EcoliWiki Page)

PF05593 RHS Repeat

Pfam (EcoliWiki Page)

PF05593 RHS Repeat

Pfam (EcoliWiki Page)

PF05593 RHS Repeat

Pfam (EcoliWiki Page)

PF05593 RHS Repeat

Pfam (EcoliWiki Page)

PF05593 RHS Repeat

Pfam (EcoliWiki Page)

PF05593 RHS Repeat

PFAM (EcoliWiki Page)

PFAM:PF05593

EcoCyc

EcoCyc:EG10849

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10849

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000840

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0842

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001724

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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