qmcA:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php
touch
 
(5 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="B46aba460d99d0"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46aba460d99d0"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 249: Line 249:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="A46aba48aa9add"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46aba48aa9add"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01145 PFAM:PF01145]
[http://pfam.janelia.org/family/PF01145 PF01145 SPFH domain / Band 7 family]
|
|
   
   
|-
|
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10264:SF27 PTHR10264:SF27]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=117892 SUPERFAMILY:117892]
|
|-
|
[[EcoCyc]]
|
EcoCyc:G6265
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG13258
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120002873
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB3046
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0001697
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 278: Line 327:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="J46a7f331d610d"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46a7f331d610d"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 08:30, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000018661 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000023312 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000004607 (score: 0.532)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G27585 (score: 1.000; bootstrap: 99%)
  • AT5G54100 (score: 0.549)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015136 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00042595 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006061 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000002960 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000019012 (score: 1.000; bootstrap: 93%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1139 (score: 1.000; bootstrap: 98%)
  • ZDB-CDNA-040425-2071 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0201908 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0034936 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20495-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000034251 (score: 1.000; bootstrap: 98%)
  • ENSGALP00000027477 (score: 0.599)
  • ENSGALP00000006610 (score: 0.363)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000348886 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000015573 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009598 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Mus musculus

  • MGI:1913842 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Oryza gramene

  • Q7EZD2 (score: 1.000; bootstrap: 99%)
  • Q9M585 (score: 0.511)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000041700 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000013151 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC16G57c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000163308 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00003655001 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000034943 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000012854 (score: 0.465)
  • ENSXETP00000050207 (score: 0.283)
  • ENSXETP00000042903 (score: 0.152)

From Inparanoid:20070104

Shigella flexneri

YBBK

From SHIGELLACYC

E. coli O157

YBBK

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01145 SPFH domain / Band 7 family

Panther (EcoliWiki Page)

PTHR10264:SF27

Superfamily (EcoliWiki Page)

SUPERFAMILY:117892

EcoCyc

EcoCyc:G6265

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13258

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002873

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3046

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001697

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=qmcA:Evolution&oldid=1389190"