leuB:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00180 PF00180  Isocitrate/isopropylmalate dehydrogenase]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11835:SF13 PTHR11835:SF13]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00180 PFAM:PF00180]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53659 SUPERFAMILY:53659]
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[[EcoCyc]]
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EcoCyc:EG11577
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11577
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001529
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1537
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0000265
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:29, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G80560 (score: 1.000; bootstrap: 100%)
  • AT1G31180 (score: 0.761)
  • AT5G14200 (score: 0.756)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00036287 (score: 1.000; bootstrap: 100%)
  • WBGene00026699 (score: 0.257)
  • WBGene00037537 (score: 0.253)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007993 (score: 1.000; bootstrap: 100%)
  • WBGene00016266 (score: 0.262)
  • WBGene00009440 (score: 0.252)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000015535 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000028091 (score: 0.212)

From Inparanoid:20070104

Oryza gramene

  • Q6AT60 (score: 1.000; bootstrap: 100%)
  • Q7Y096 (score: 0.994)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YCL018W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC1A42c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000014804 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

LEUB

From SHIGELLACYC

E. coli O157

LEUB

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00180 Isocitrate/isopropylmalate dehydrogenase

Panther (EcoliWiki Page)

PTHR11835:SF13

Superfamily (EcoliWiki Page)

SUPERFAMILY:53659

EcoCyc

EcoCyc:EG11577

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11577

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001529

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1537

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000265

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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