rsmA:Evolution: Difference between revisions

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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00398 PFAM:PF00398]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53335 SUPERFAMILY:53335]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53335 SUPERFAMILY:53335]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11727:SF7 PTHR11727:SF7]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11727:SF7 PTHR11727:SF7]
[http://pfam.janelia.org/family/PF00398 PF00398  Ribosomal RNA adenine dimethylase]
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[[EcoCyc]]
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EcoCyc:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:29, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016944 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000023168 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G66360 (score: 1.000; bootstrap: 76%)
  • AT2G47420 (score: 0.289)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015680 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00032987 (score: 1.000; bootstrap: 49%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020189 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000817 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000008063 (score: 1.000; bootstrap: 65%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040801-75 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040801-82 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0186850 (score: 1.000; bootstrap: 73%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0039627 (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20255-PA (score: 1.000; bootstrap: 50%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000022157 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000031512 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000014624 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000010150 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Mus musculus

  • MGI:2146851 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Oryza gramene

  • Q6Z4B0 (score: 1.000; bootstrap: 100%)
  • Q8SAZ2 (score: 0.074)
  • Q7G6D5 (score: 0.074)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000031966 (score: 1.000; bootstrap: 76%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000022397 (score: 1.000; bootstrap: 73%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPL266W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC3362 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000139638 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00028675001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000017166 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Shigella flexneri

KSGA

From SHIGELLACYC

E. coli O157

KSGA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:53335

Panther (EcoliWiki Page)

PTHR11727:SF7

Pfam (EcoliWiki Page)

PF00398 Ribosomal RNA adenine dimethylase

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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