ynbC:Evolution: Difference between revisions

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{|class = 'sortable' {{Prettytable}} id='209311'
{|  id="P46abbe86ec713"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Canis familiaris''   
''Canis familiaris''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415928&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
{{BacktoTop}}
{{BacktoTop}}
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{|class = 'sortable' {{Prettytable}} id='209311'
{|  id="Y4c604fc53f02e"  class=" tableEdit Evolution_families_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
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''Arabidopsis thaliana'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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* AT5G11650 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF12146 PF12146  Putative lysophospholipase]
* AT1G73480 (score: 0.442)
* AT1G18360 (score: 0.395)
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From Inparanoid:20070104
|-
|-  
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''Canis familiaris'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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* ENSCAFP00000006072 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF12147 PF12147  Putative lysophospholipase]
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From Inparanoid:20070104
   
|-
 
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|- class="tableEdit_footer"
''Gallus gallus''  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.46793.Y4c604fc53f02e&page=46793&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
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* ENSGALP00000009619 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
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''Homo sapiens'' 
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* ENSP00000265052 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
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''Monodelphis domestica'' 
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* ENSMODP00000009893 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
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''Mus musculus'' 
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* MGI:1346042 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
|-
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''Oryza gramene'' 
|
* Q4VWY7 (score: 1.000; bootstrap: 100%)
* Q6H452 (score: 0.416)
* O49147 (score: 0.411)
* Q6ASW1 (score: 0.367)
* Q8LLN8 (score: 0.274)
* Q8H4S9 (score: 0.083)
* Q94D81 (score: 0.066)
* Q5N7L1 (score: 0.050)
|
From Inparanoid:20070104
|-
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''Rattus norvegicus'' 
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* ENSRNOP00000019853 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
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''Schizosaccharomyces pombe'' 
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* SPCC5E45c (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
|-
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''Shigella flexneri'' 
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S1466
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From SHIGELLACYC
|-
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''E. coli'' O157
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Z2317
|
From ECOO157CYC
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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Latest revision as of 21:16, 16 August 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G11650 (score: 1.000; bootstrap: 100%)
  • AT1G73480 (score: 0.442)
  • AT1G18360 (score: 0.395)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000006072 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000009619 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000265052 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009893 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1346042 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q4VWY7 (score: 1.000; bootstrap: 100%)
  • Q6H452 (score: 0.416)
  • O49147 (score: 0.411)
  • Q6ASW1 (score: 0.367)
  • Q8LLN8 (score: 0.274)
  • Q8H4S9 (score: 0.083)
  • Q94D81 (score: 0.066)
  • Q5N7L1 (score: 0.050)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000019853 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC5E45c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

S1466

From SHIGELLACYC

E. coli O157

Z2317

From ECOO157CYC

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Notes

Families

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF12146 Putative lysophospholipase

Pfam (EcoliWiki Page)

PF12147 Putative lysophospholipase


edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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