ybeQ:Evolution: Difference between revisions

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{|class = 'sortable' {{Prettytable}} id='208033'
{|  id="W46aba842a0ec9"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45261.W46aba842a0ec9&page=45261&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45261.W46aba842a0ec9&page=45261&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415177&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.45261.W46aba842a0ec9-->
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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
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*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_families_table_help}}
{|class = 'sortable' {{Prettytable}} id='208033'
{|  id="M4c604ef941d0e"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
|-  
|
|
''Anopheles gambiae'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ENSANGP00000019196 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Apis mellifera'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ENSAPMP00000032810 (score: 1.000; bootstrap: 99%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Arabidopsis thaliana'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* AT1G18260 (score: 1.000; bootstrap: 84%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
* AT1G73570 (score: 0.682)
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Bos taurus'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ENSBTAP00000010628 (score: 1.000; bootstrap: 91%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
* ENSBTAP00000026798 (score: 0.457)
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Caenorhabditis briggsae'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
* WBGene00041866 (score: 1.000; bootstrap: 100%)  
|
From Inparanoid:20070104
|-
|
|
''Caenorhabditis elegans''  
[http://pfam.janelia.org/family/PF08238 PF08238 Sel1 repeat]
|
|
* WBGene00004759 (score: 1.000; bootstrap: 100%)
|-
|
|
From Inparanoid:20070104
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|-
|
''Canis familiaris'' 
|
|
* ENSCAFP00000025521 (score: 1.000; bootstrap: 91%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
* ENSCAFP00000008314 (score: 0.356)
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Ciona intestinalis'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ENSCINP00000014215 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
|
|
From Inparanoid:20070104
|-
|-  
|
|
''Danio rerio'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ZDB-GENE-041001-122 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF08238 PF08238  Sel1 repeat]
|
|
From Inparanoid:20070104
   
|-
 
|
|- class="tableEdit_footer"
''Dictyostelium discoideum''  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.45261.M4c604ef941d0e&page=45261&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
|
* DDB0190258 (score: 1.000; bootstrap: 76%)
* DDB0190259 (score: 0.389)
|
From Inparanoid:20070104
|-
|
''Drosophila melanogaster'' 
|
* FBgn0028475 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Drosophila pseudoobscura'' 
|
* GA10167-PA (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Gallus gallus'' 
|
* ENSGALP00000017201 (score: 1.000; bootstrap: 95%)
|
From Inparanoid:20070104
|-
|
''Homo sapiens'' 
|
* ENSP00000337053 (score: 1.000; bootstrap: 91%)
* ENSP00000284951 (score: 0.327)
|
From Inparanoid:20070104
|-
|
''Macaca mulatta'' 
|
* ENSMMUP00000013095 (score: 1.000; bootstrap: 91%)
* ENSMMUP00000002941 (score: 0.297)
|
From Inparanoid:20070104
|-
|
''Monodelphis domestica'' 
|
* ENSMODP00000004548 (score: 1.000; bootstrap: 87%)
* ENSMODP00000006431 (score: 0.311)
|
From Inparanoid:20070104
|-
|
''Mus musculus'' 
|
* MGI:1329016 (score: 1.000; bootstrap: 93%)
* MGI:2684964 (score: 0.354)
|
From Inparanoid:20070104
|-
|
''Oryza gramene'' 
|
* Q7XKU0 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Pan troglodytes'' 
|
* ENSPTRP00000011221 (score: 1.000; bootstrap: 91%)
* ENSPTRP00000040464 (score: 0.323)
|
From Inparanoid:20070104
|-
|
''Rattus norvegicus'' 
|
* ENSRNOP00000036379 (score: 1.000; bootstrap: 91%)
* ENSRNOP00000006143 (score: 0.458)
|
From Inparanoid:20070104
|-
|
''Saccharomyces cerevisiae'' 
|
* YBL061C (score: 1.000; bootstrap: 100%)
* YER096W (score: 0.149)
|
From Inparanoid:20070104
|-
|
''Schizosaccharomyces pombe'' 
|
* SPAC24B110c (score: 1.000; bootstrap: 49%)
|
From Inparanoid:20070104
|-
|
''Takifugu rubripes'' 
|
* NEWSINFRUP00000140353 (score: 1.000; bootstrap: 80%)
|
From Inparanoid:20070104
|-
|
''Tetraodon nigroviridis'' 
|
* GSTENP00026546001 (score: 1.000; bootstrap: 57%)
|
From Inparanoid:20070104
|-
|
''Xenopus tropicalis'' 
|
* ENSXETP00000013946 (score: 1.000; bootstrap: 52%)
|
From Inparanoid:20070104
|-
|
''Shigella flexneri'' 
|
YBEQ
|
From SHIGELLACYC
|-
|
''E. coli'' O157
|
YBEQ
|
From ECOO157CYC
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45261.W46aba842a0ec9&page=45261&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Evolution_families_table_help}}
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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Latest revision as of 20:12, 16 August 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000019196 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000032810 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G18260 (score: 1.000; bootstrap: 84%)
  • AT1G73570 (score: 0.682)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010628 (score: 1.000; bootstrap: 91%)
  • ENSBTAP00000026798 (score: 0.457)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041866 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004759 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000025521 (score: 1.000; bootstrap: 91%)
  • ENSCAFP00000008314 (score: 0.356)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014215 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041001-122 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190258 (score: 1.000; bootstrap: 76%)
  • DDB0190259 (score: 0.389)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0028475 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10167-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000017201 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000337053 (score: 1.000; bootstrap: 91%)
  • ENSP00000284951 (score: 0.327)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000013095 (score: 1.000; bootstrap: 91%)
  • ENSMMUP00000002941 (score: 0.297)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004548 (score: 1.000; bootstrap: 87%)
  • ENSMODP00000006431 (score: 0.311)

From Inparanoid:20070104

Mus musculus

  • MGI:1329016 (score: 1.000; bootstrap: 93%)
  • MGI:2684964 (score: 0.354)

From Inparanoid:20070104

Oryza gramene

  • Q7XKU0 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000011221 (score: 1.000; bootstrap: 91%)
  • ENSPTRP00000040464 (score: 0.323)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000036379 (score: 1.000; bootstrap: 91%)
  • ENSRNOP00000006143 (score: 0.458)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBL061C (score: 1.000; bootstrap: 100%)
  • YER096W (score: 0.149)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC24B110c (score: 1.000; bootstrap: 49%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140353 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026546001 (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000013946 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Shigella flexneri

YBEQ

From SHIGELLACYC

E. coli O157

YBEQ

From ECOO157CYC

edit table


Notes

Families

[back to top]


See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat

Pfam (EcoliWiki Page)

PF08238 Sel1 repeat


edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


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