fabH:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Oryza gramene''   
''Oryza gramene''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415609&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
{{BacktoTop}}
{{BacktoTop}}
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{|class = 'sortable' {{Prettytable}} id='208794'
{|  id="H4c604e0a17c43"  class=" tableEdit Evolution_families_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
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''Arabidopsis thaliana'' 
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* AT1G62640 (score: 1.000; bootstrap: 100%)  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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From Inparanoid:20070104
[http://pfam.janelia.org/family/PF08541 PF08541  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal  ]
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''Oryza gramene''  
   
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* Q7X8V9 (score: 1.000; bootstrap: 99%)  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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From Inparanoid:20070104
[http://pfam.janelia.org/family/PF08545 PF08545  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III]
|-
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''Xenopus tropicalis''  
   
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* ENSXETP00000023228 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104
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''Shigella flexneri'' 
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FABH
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From SHIGELLACYC
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''E. coli'' O157
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FABH
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From ECOO157CYC
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 22:14, 15 August 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G62640 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q7X8V9 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000023228 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

FABH

From SHIGELLACYC

E. coli O157

FABH

From ECOO157CYC

edit table


Notes

Families

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP) synthase III C terminal ]

Pfam (EcoliWiki Page)

PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP) synthase III]


edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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