RefGenome GO Annotation Records: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Table edited by Bmcintosh via TableEdit
Table edited by Bmcintosh via TableEdit
 
(42 intermediate revisions by 3 users not shown)
Line 1: Line 1:
Summary as of Dec 16, 2009:
Complete Annotation: 107
Partial Annotation:  35
No Annotations:  18
Total:  160
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.135136.E488640b25e7e4-->
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.135136.E488640b25e7e4-->
<!--
<!--
Line 6: Line 17:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="E488640b25e7e4" class=" tableEdit "   
|- bgcolor = #ccccff
|- bgcolor = #ccccff
!|Human Gene Name &/or Entrez Gene ID!!''E. coli'' Ortholog!!Target Date!!Function Term(s)!!Process Term(s)!!Component Term(s)!!Complete Annotation According to RefGenomes?!!Complete Annotation?
!|Human Gene Name &/or Entrez Gene ID!!''E. coli'' Ortholog!!Target Date!!Function Term(s)!!Process Term(s)!!Component Term(s)!!Complete Annotation According to RefGenomes?!!Complete Annotation?
Line 441: Line 452:
|
|
Jan-08
Jan-08
|
4
|
|
2
2
|
|
 
2
|
|
 
Yes
|
 
|
|
   
   
Line 458: Line 469:
|
|
Jan-08
Jan-08
|
4
|
|
2
2
|
|
 
2
|
|
 
Yes
|
 
|
|
   
   
Line 565: Line 576:
2
2
|
|
 
1
|
|
 
Yes
|
|
   
   
Line 715: Line 726:
Mar-08
Mar-08
|
|
3
4
|
|
 
1
|
|
 
1
|
|
 
Yes
|
|
   
   
Line 783: Line 794:
Apr-08
Apr-08
|
|
2
4
|
|
 
6
|
|
 
1
|
|
 
Yes
|
|
   
   
Line 1,146: Line 1,157:
4
4
|
|
 
1
|
|
 
Yes
|
|
   
   
Line 1,197: Line 1,208:
1
1
|
|
 
1
|
|
 
Yes
|
|
   
   
Line 1,280: Line 1,291:
3
3
|
|
 
1
|
|
1
1
|
|
 
Yes
|
|
   
   
Line 1,333: Line 1,344:
3
3
|
|
 
1
|
|
 
Yes
|
|
   
   
Line 1,350: Line 1,361:
3
3
|
|
 
1
|
|
 
Yes
|
|
   
   
Line 1,503: Line 1,514:


|
|
 
1
|
|


Line 1,735: Line 1,746:
P28304 qor (hcz, b4051)
P28304 qor (hcz, b4051)
|
|
Feb 2009
Feb-09
|
|
1
1
Line 1,758: Line 1,769:


|
|
 
3
|
|


Line 1,769: Line 1,780:
P00968 carA (pyrA, b0033)
P00968 carA (pyrA, b0033)
|
|
Feb 2009
Feb-09
|
|
5
5
Line 1,786: Line 1,797:
P23833 (puuC, aldH, b1300)
P23833 (puuC, aldH, b1300)
|
|
Mar 2009
Mar-09
|
|
1
1
Line 1,803: Line 1,814:
P80668 (feaB, maoB, padA, ydbG, b1385)
P80668 (feaB, maoB, padA, ydbG, b1385)
|
|
Mar 2009
Mar-09
|
|
 
4
|
|
 
4
|
|


Line 1,820: Line 1,831:
P0ABK5 (cysK)
P0ABK5 (cysK)
|
|
Mar 2009
Mar-09
|
|
1
1
Line 1,837: Line 1,848:
P0A9P0 (lpd)
P0A9P0 (lpd)
|
|
Mar 2009
Mar-09
|
|
11
11
Line 1,854: Line 1,865:
P0AB77 (kbl)
P0AB77 (kbl)
|
|
Mar 2009
Mar-09
|
|
 
4
|
|


|
|
 
1
|
|


Line 1,871: Line 1,882:
hemB
hemB
|
|
Mar 2009
Mar-09
|
|
1
1
Line 1,888: Line 1,899:
hemC
hemC
|
|
Mar 2009
Mar-09
|
|
1
1
Line 1,905: Line 1,916:
hemE
hemE
|
|
Mar 2009
Mar-09
|
|
2
2
Line 1,922: Line 1,933:
hemF
hemF
|
|
Mar 2009
Mar-09
|
|
2
4
|
|
 
1
|
|
 
1
|
|
 
Yes
|
|
   
   
Line 1,939: Line 1,950:
hemH
hemH
|
|
Mar 2009
Mar-09
|
|


Line 1,956: Line 1,967:
P77671 (allB)
P77671 (allB)
|
|
May 2009
May-09
|
|
5
5
Line 1,973: Line 1,984:
P33025 (yeiN)
P33025 (yeiN)
|
|
May 2009
May-09
|
1
|
|


|
|
 
1
|
|


|
No papers in PubMed or Textpresso (5/14/09).
|
|
   
   
Line 1,990: Line 2,001:
P75876 (rimI, aka yccW)
P75876 (rimI, aka yccW)
|
|
May 2009
May-09
|
|
2
2
Line 2,007: Line 2,018:
P23522 (garL, aka yhaF)
P23522 (garL, aka yhaF)
|
|
May 2009
May-09
|
|
3
3
Line 2,024: Line 2,035:
P76469 (kdrA, aka yfaU)
P76469 (kdrA, aka yfaU)
|
|
May 2009
May-09
|
|
4
4
Line 2,041: Line 2,052:
P33919 (yejH, aka yejI, yejJ)
P33919 (yejH, aka yejI, yejJ)
|
|
May 2009
May-09
|
|


Line 2,058: Line 2,069:
P37610 (tauD, aka ssiD, yaiG)
P37610 (tauD, aka ssiD, yaiG)
|
|
May 2009
May-09
|
|
4
4
Line 2,264: Line 2,275:
Jul-09
Jul-09
|
|
 
8
|
|
 
7
|
|


Line 2,298: Line 2,309:
Jul-09
Jul-09
|
|
 
1
|
|
 
1
|
|


Line 2,332: Line 2,343:
Jul-09
Jul-09
|
|
 
5
|
|
 
1
|
|


Line 2,366: Line 2,377:
Jul-09
Jul-09
|
|
 
1
|
|


Line 2,485: Line 2,496:
Jul-09
Jul-09
|
|
 
1
|
|
 
1
|
|


Line 2,519: Line 2,530:
Jul-09
Jul-09
|
|
 
7
|
|
 
5
|
|
 
1
|
|
 
Yes
|
|
   
   
Line 2,536: Line 2,547:
Aug-09
Aug-09
|
|
 
3
|
|
 
4
|
|
 
2
|
|
 
Yes
|
|
   
   
|-  
|-  
|
|
PANTHER10314 (Q86YJ6 THNS2_HUMAN; Q8IYQ7 THNS1_HUMAN)
PTHR10906
|
|
P00934 (thrC)
P0AGA2 (SecY)
|
|
Jul-09
Sept-09
|
|
 
3
|
|
 
3
|
|
 
2
|
|
 
Yes
|
|
   
   
|-  
|-  
|
|
PANTHER10314
PANTHER10314 (Q86YJ6 THNS2_HUMAN; Q8IYQ7 THNS1_HUMAN)
|
|
P0A877 (trpA)
P00934 (thrC)
|
|
Jul-09
Jul-09
Line 2,574: Line 2,585:
2
2
|
|
1
 
|
|
Yes
 
|
|
   
   
|-  
|-  
|
|
PANTHER10314
PTHR20856
|
|
P0A879 (trpB)
P0A8V2 (rpoB)
|
Sept-09
|
1
|
1
|
 
|
 
|
|-
|
PANTHER10314
|
P0A877 (trpA)
|
|
Jul-09
Jul-09
Line 2,592: Line 2,620:
|
|
1
1
|
Yes
|
|-
|
PTHR24096
|
P31552 (caiC)
|
Sept-09
|
2
|
|
|
|
|-
|
PANTHER10314
|
P0A879 (trpB)
|
Jul-09
|
3
|
2
|
1
|
Yes
|
|-
|
PTHR24096
|
P69451 (fadD)
|
Sept-09
|
4
|
3
|
1
|
Yes
|
|-
|
PTHR24096
|
P37353 (menE)
|
Sept-09
|
3
|
2
|
|
|
|-
|
PTHR24096
|
P31119 (aas)
|
Sept-09
|
2
|
2
|
1
|
Yes
|
|-
|
PTHR12563
|
P0A7A7 (plsB)
|
Oct-09
|
1
|
2
|
3
|
Yes
|
|-
|
PTHR20854
|
P22255  (cysQ)
|
Oct-09
|
2
|
1
|
1
|
Yes
|
|-
|
PTHR20854
|
P0ADG4 (suhB)
|
Oct-09
|
5
|
1
|
|
|
|-
|
PTHR10949
|
P60716 (lipA)
|
Oct-09
|
3
|
2
|
1
|
Yes
|
|-
|
PTHR23151
|
P06959 (aceF)
|
Oct-09
|
11
|
2
|
3
|
Yes
|
|-
|
PTHR23151
|
P0AFG6 (sucB)
|
Oct-09
|
5
|
1
|
1
|
Yes
|
|-
|
PTHR12835
|
P06709 (birA)
|
Oct-09
|
3
|
1
|
1
|
Yes
|
|-
|
PTHR11902
|
P0A6P9 (eno)
|
Oct-09
|
5
|
1
|
3
|
Yes
|
|-
|
AQP1
|
P60844 (apqZ)
|
Feb-10
|
1
|
3
|
2
|
Yes
|
|-
|
DUSP6
|
P76093 (ynbD)
|
Feb-10
|
0
|
0
|
1 (ISM)
|
No papers as of 6/24/10
|
No papers as of 6/24/10.
|-
|
TAP2
|
P77265 (mdlA)
|
Feb-10
|
|
|
|
|
|-
|
TAP2
|
P60752 (msbA)
|
Feb-10
|
7
|
1
|
2
|
|
Yes
Yes
Line 2,597: Line 2,914:
   
   


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.135136.E488640b25e7e4&page=135136&pagename={{FULLPAGENAMEE}}&type=0&template= edit table] || || || || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.135136.E488640b25e7e4&page=135136&pagename={{FULLPAGENAMEE}}&type=0&template= edit table]</span> || || || || || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.135136.E488640b25e7e4--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.135136.E488640b25e7e4--></protect>

Latest revision as of 21:37, 29 June 2010

Summary as of Dec 16, 2009:

Complete Annotation: 107

Partial Annotation: 35

No Annotations: 18

Total: 160


Human Gene Name &/or Entrez Gene ID E. coli Ortholog Target Date Function Term(s) Process Term(s) Component Term(s) Complete Annotation According to RefGenomes? Complete Annotation?

2956

mutS

Aug-06

2

3

2

yes

1352

cyoE

Aug-06

1

2

2

yes

2584

galK

Aug-06

3

4 (+2 under review)

1

Yes

3251

hpt

Aug-06

2

3

1

Yes

27235

ubiA

Aug-06

1

1

1

yes

538

copA

Oct-06

3

2

2

yes

540

copA

Oct-06

3

2

2

yes

4719

nuoG

Feb-07

6

2

2

yes

4720

nuoC

Feb-07

3

2

2

yes

4728

nuoI

Feb-07

4

2

2

yes

374291

nuoB

Feb-07

4

2

2

yes

7915

gabD

Mar-07

2

3

1

Yes

4292

mutL

Apr-07

1

1

1

yes

6647

sodC

Apr-07

5

1

2

yes

1807

ygeZ

May-07

1

1

2

yes

7486

recQ

Jul-07

9

4

2

Yes

48

acnA

Oct-07

3

4

1

Yes

5834

glgP

Oct-07

1

2

1

Yes

92797

recD (?)

Nov-07

7

2

1

Yes

4706

acpP

Nov-07

3

4

1

Yes

4723

nuoF

Nov-07

5

1

2

yes

6240

nrdA

Jan-08

3

2

2

Yes

6240

nrdE

Jan-08

4

2

2

Yes

RRM2, RRM2B (Gene ID:6241)

nrdB

Jan-08

3

2

2

Yes

50484

nrdB

Jan-08

3

2

2

Yes

6470

glyA

Jan-08

4

2

2

Yes

6472

glyA

Jan-08

4

2

2

Yes

2805

aspC

Jan-08

6

3

1

Yes

2805

tyrB

Jan-08

6

5

1

yes

2806

aspC

Jan-08

6

3

1

Yes

2806

tyrB

Jan-08

6

3

1

yes

440

asnB

Jan-08

1

1

1

yes

80150

iaaA

Jan-08

3

2

1

Yes

23475

nadC

Jan-08

1

1

1

Yes

84696

yheT

Feb-08

1

171586

yheT

Feb-08

1

79852

mhpC (?)

Feb-08

3

1

1

yes

83451

ybfF (?)

Feb-08

1

128

frmA

Feb-08

4

1

1

Yes

131

frmA

Feb-08

4

1

1

Yes

1738

lpd

Feb-08

4

6

1

Yes

11315

yajL

Mar-08

4

1

1

Yes

5052

ahpC

Mar-08

4

1

1

Yes

7001

ahpC

Mar-08

4

1

1

Yes

10935

ahpC

Mar-08

4

1

1

Yes

100

add

Apr-08

4

6

1

Yes

4860

xapA

Apr-08

2

2

1

Yes

2395

cyaY

Apr-08

2

1

1

yes

SOD2 (Gene ID:6648)

sodA

Apr-08

5

2

1

Yes

6648

sodB

Apr-08

6

6

1

Yes

5018

yidC

Apr-08

2

1

2

Yes

6729

ffh

Apr-08

2

2

2

Yes

847

katE

Apr-08

3

2

1

Yes

498

atpA

Apr-08

1

1

1

Yes

4508

atpB

Apr-08

1

1

1

Yes

513

atpC

Apr-08

1

1

1

Yes

506

atpD

Apr-08

1

1

1

Yes

509

atpG

Apr-08

1

1

1

Yes

539

atpH

Apr-08

1

1

1

Yes

rppH

Apr-08

2

2

1

yes

TPI1

tpiA

May-08

1

2

1

yes (12/22/08)

RPS20

rpsJ

May-08

2

2

2

yes (12/22/08)

MDH2

mdh

May-08

4

5

2

Yes

need to annotate process term for TCA cycle

DNAJA3

dnaJ

May-08

5

2

2

yes

RPS15A

rpsH

May-08

2

1

1

yes

GALE

galE

May-08

1

4

1

Yes

ADSS, ADSSL1

purA

May-08

1

4

1

Yes

NFU1

gntY

May-08

PPAT

purF

May-08

3

2

1

Yes

GCSH

gcvH

May-08

1

1

1

Yes

SDHA

sdhA

May-08

3

3

2

yes

PDXK

pdxK

May-08

6

1

PDXK

pdxY

May-08

2

4

1

Yes

UMPS

pyrF

May-08

2

1

1

Yes

UMPS

pyrE

May-08

3

1

1

Yes

CYB5R4

fpr

May-08

2

2

1

Yes

TARS, TARSL2

thrS

May-08

7

3

1

Yes

KARS

lysS

May-08

2

3

1

Yes

KARS

lysU

May-08

4

3

1

Yes

CHAC1, CHAC2

chaC

May-08

Basic annotation completed by EcoCyc already

CARS

cysS

May-08

7

1

GLUD1, GLUD2

gdhA

May-08

1

1

1

Yes

RPS3

rpsC

Aug-08

3

1

2

Yes (12/22/08)

RPS11

rpsQ

Aug-08

3

2

2

Yes (12/22/08)

RPS14

rpsK

Aug-08

4

1

1

yes (12/22/08)

NDUFV2

nuoE

Sep-08

5

2

3

yes

FLJ10769

yjeF

Sep-08

PGAM2

gpmA

Oct-08

1

RPUSD2

rluA

Oct-08

1

6

RPUSD2

rluC

Oct-08

1

4

RPUSD2

truC

Oct-08

1

4

C21orf33

elbB

Nov-08

2

C22orf28

rtcB (yhgL)

Nov-08

C9orf103

idnK (gntV)

Nov-08

C9orf97, OVCA2

yceA

Nov-08

CEP250

mukB

Nov-08

6

4

1

Yes

CUTC

cutC

Nov-08

3

DERA

deoC

Nov-08

2

3

FGGY

araB

Nov-08

3

3

1

yes

C9orf103

gntK

Nov-08

2

CLPX (GeneID: 10845)

P0A6H1

Dec-08

CRYZL1

P28304 qor (hcz, b4051)

Feb-09

1

CLPB (GeneID: 81570)

P63284

Dec-08

3

CSP1

P00968 carA (pyrA, b0033)

Feb-09

5

3

2

Yes

ALDH1A1

P23833 (puuC, aldH, b1300)

Mar-09

1

1

ALDH1A1

P80668 (feaB, maoB, padA, ydbG, b1385)

Mar-09

4

4

CBS

P0ABK5 (cysK)

Mar-09

1

1

1

Yes

DLD

P0A9P0 (lpd)

Mar-09

11

7

5

Yes

HEM1

P0AB77 (kbl)

Mar-09

4

1

HEM2

hemB

Mar-09

1

1

1

Yes

HEM3

hemC

Mar-09

1

3

1

Yes

DCUP

hemE

Mar-09

2

3

HEM6

hemF

Mar-09

4

1

1

Yes

HEMH

hemH

Mar-09

no human gene (ORTHOMCL7668)

P77671 (allB)

May-09

5

1

1

Yes

no human gene (ORTHOMCL5480)

P33025 (yeiN)

May-09

1

1

no human gene (ORTHOMCL10848)

P75876 (rimI, aka yccW)

May-09

2

2

no human gene (ORTHOMCL14289)

P23522 (garL, aka yhaF)

May-09

3

3

1

Yes

no human gene (ORTHOMCL14289)

P76469 (kdrA, aka yfaU)

May-09

4

1

1

Yes

no human gene (ORTHOMCL18742)

P33919 (yejH, aka yejI, yejJ)

May-09

no human gene (ORTHOMCL18767)

P37610 (tauD, aka ssiD, yaiG)

May-09

4

1

1

Yes

no human gene (ORTHOMCL6749)

P46891 (cof)

May-09, Jun-09

3

1

no human gene (ORTHOMCL6749)

P27848 (yigL)

May-09, Jun-09

4

0

0

no human gene (ORTHOMCL6749)

P21829 (ybhA)

May-09, Jun-09

7

cellular function not known as of 7/09

0

Yes

Yes, as of 7/09

no human gene (ORTHOMCL6749)

P0A8Y5 (yidA)

May-09, Jun-09

3

biological function not known as of 7/09

0

yes

yes, as of 7/09

SER2 (ORTHOMCL1779)

P0AGB0 (serB)

Jun-09

3

2

1

Yes

CORL2 (ORTHOMCL30548)

P32687 (yjbF)

Jun-09

1

1

CORL2 (ORTHOMCL30548)

P75884 (gfcB)

Jun-09

no human gene

P10408 (secA)

Jul-09

3

4

4

Yes

SLC34A1 (PANTHER10010)

P0A9K7 (phoU)

Jul-09

1

SLC34A1 (PANTHER10010)

P0AF43 (yjbB)

Jul-09

prosc (PANTHER10146)

P67080 (yggS)

Jul-09

LIN28 (PANTHER11544)

P0A9X9 (cspA)

Jul-09

8

7

LIN28 (PANTHER11544)

P36995 (cspB)

Jul-09

LIN28 (PANTHER11544)

P0A9Y6 (cspC)

Jul-09

1

1

LIN28 (PANTHER11544)

P0A968 (cspD)

Jul-09

LIN28 (PANTHER11544)

P0A972 (cspE)

Jul-09

5

1

LIN28 (PANTHER11544)

P0A976 (cspF)

Jul-09

LIN28 (PANTHER11544)

P0A978 (cspG)

Jul-09

1

LIN28 (PANTHER11544)

P0A982 (cspH)

Jul-09

LIN28 (PANTHER11544)

P0A986 (cspI)

Jul-09

PANTHER10314 (P35520 CBS_HUMAN)

P0ABK5 (cysK)

Jul-09

4

4

5

Yes

PANTHER10314 (P35520 CBS_HUMAN)

P16703 (cysM)

Jul-09

3

3

PANTHER10314

P76316 (dcyD aka yedO)

Jul-09

3

3

PANTHER10314

P00926 (dsdA)

Jul-09

3

1

1

Yes

PANTHER10314

P66899 (ygeX)

Jul-09

1

1

PANTHER10314 (Q9GZT4 SRR_HUMAN)

P0AGF6 (tdcB)

Jul-09

6

5

1

Yes

PANTHER10314 (Q9GZT4 SRR_HUMAN)

P04968 (ilvA)

Jul-09

7

5

1

Yes

PTHR12383

P00803 (lepB)

Aug-09

3

4

2

Yes

PTHR10906

P0AGA2 (SecY)

Sept-09

3

3

2

Yes

PANTHER10314 (Q86YJ6 THNS2_HUMAN; Q8IYQ7 THNS1_HUMAN)

P00934 (thrC)

Jul-09

3

2

PTHR20856

P0A8V2 (rpoB)

Sept-09

1

1

PANTHER10314

P0A877 (trpA)

Jul-09

3

2

1

Yes

PTHR24096

P31552 (caiC)

Sept-09

2

PANTHER10314

P0A879 (trpB)

Jul-09

3

2

1

Yes

PTHR24096

P69451 (fadD)

Sept-09

4

3

1

Yes

PTHR24096

P37353 (menE)

Sept-09

3

2

PTHR24096

P31119 (aas)

Sept-09

2

2

1

Yes

PTHR12563

P0A7A7 (plsB)

Oct-09

1

2

3

Yes

PTHR20854

P22255 (cysQ)

Oct-09

2

1

1

Yes

PTHR20854

P0ADG4 (suhB)

Oct-09

5

1

PTHR10949

P60716 (lipA)

Oct-09

3

2

1

Yes

PTHR23151

P06959 (aceF)

Oct-09

11

2

3

Yes

PTHR23151

P0AFG6 (sucB)

Oct-09

5

1

1

Yes

PTHR12835

P06709 (birA)

Oct-09

3

1

1

Yes

PTHR11902

P0A6P9 (eno)

Oct-09

5

1

3

Yes

AQP1

P60844 (apqZ)

Feb-10

1

3

2

Yes

DUSP6

P76093 (ynbD)

Feb-10

0

0

1 (ISM)

No papers as of 6/24/10

No papers as of 6/24/10.

TAP2

P77265 (mdlA)

Feb-10

TAP2

P60752 (msbA)

Feb-10

7

1

2

Yes


edit table
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=RefGenome_GO_Annotation_Records&oldid=1167398"