RefGenome GO Annotation Records: Difference between revisions
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Table edited by Bmcintosh via TableEdit |
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Latest revision as of 21:37, 29 June 2010
Summary as of Dec 16, 2009:
Complete Annotation: 107
Partial Annotation: 35
No Annotations: 18
Total: 160
| Human Gene Name &/or Entrez Gene ID | E. coli Ortholog | Target Date | Function Term(s) | Process Term(s) | Component Term(s) | Complete Annotation According to RefGenomes? | Complete Annotation? |
|---|---|---|---|---|---|---|---|
|
2956 |
mutS |
Aug-06 |
2 |
3 |
2 |
yes |
|
|
1352 |
cyoE |
Aug-06 |
1 |
2 |
2 |
yes |
|
|
2584 |
galK |
Aug-06 |
3 |
4 (+2 under review) |
1 |
Yes |
|
|
3251 |
hpt |
Aug-06 |
2 |
3 |
1 |
Yes |
|
|
27235 |
ubiA |
Aug-06 |
1 |
1 |
1 |
yes |
|
|
538 |
copA |
Oct-06 |
3 |
2 |
2 |
yes |
|
|
540 |
copA |
Oct-06 |
3 |
2 |
2 |
yes |
|
|
4719 |
nuoG |
Feb-07 |
6 |
2 |
2 |
yes |
|
|
4720 |
nuoC |
Feb-07 |
3 |
2 |
2 |
yes |
|
|
4728 |
nuoI |
Feb-07 |
4 |
2 |
2 |
yes |
|
|
374291 |
nuoB |
Feb-07 |
4 |
2 |
2 |
yes |
|
|
7915 |
gabD |
Mar-07 |
2 |
3 |
1 |
Yes |
|
|
4292 |
mutL |
Apr-07 |
1 |
1 |
1 |
yes |
|
|
6647 |
sodC |
Apr-07 |
5 |
1 |
2 |
yes |
|
|
1807 |
ygeZ |
May-07 |
1 |
1 |
2 |
yes |
|
|
7486 |
recQ |
Jul-07 |
9 |
4 |
2 |
Yes |
|
|
48 |
acnA |
Oct-07 |
3 |
4 |
1 |
Yes |
|
|
5834 |
glgP |
Oct-07 |
1 |
2 |
1 |
Yes |
|
|
92797 |
recD (?) |
Nov-07 |
7 |
2 |
1 |
Yes |
|
|
4706 |
acpP |
Nov-07 |
3 |
4 |
1 |
Yes |
|
|
4723 |
nuoF |
Nov-07 |
5 |
1 |
2 |
yes |
|
|
6240 |
nrdA |
Jan-08 |
3 |
2 |
2 |
Yes |
|
|
6240 |
nrdE |
Jan-08 |
4 |
2 |
2 |
Yes |
|
|
RRM2, RRM2B (Gene ID:6241) |
nrdB |
Jan-08 |
3 |
2 |
2 |
Yes |
|
|
50484 |
nrdB |
Jan-08 |
3 |
2 |
2 |
Yes |
|
|
6470 |
glyA |
Jan-08 |
4 |
2 |
2 |
Yes |
|
|
6472 |
glyA |
Jan-08 |
4 |
2 |
2 |
Yes |
|
|
2805 |
aspC |
Jan-08 |
6 |
3 |
1 |
Yes |
|
|
2805 |
tyrB |
Jan-08 |
6 |
5 |
1 |
yes |
|
|
2806 |
aspC |
Jan-08 |
6 |
3 |
1 |
Yes |
|
|
2806 |
tyrB |
Jan-08 |
6 |
3 |
1 |
yes |
|
|
440 |
asnB |
Jan-08 |
1 |
1 |
1 |
yes |
|
|
80150 |
iaaA |
Jan-08 |
3 |
2 |
1 |
Yes |
|
|
23475 |
nadC |
Jan-08 |
1 |
1 |
1 |
Yes |
|
|
84696 |
yheT |
Feb-08 |
1 |
||||
|
171586 |
yheT |
Feb-08 |
1 |
||||
|
79852 |
mhpC (?) |
Feb-08 |
3 |
1 |
1 |
yes |
|
|
83451 |
ybfF (?) |
Feb-08 |
1 |
||||
|
128 |
frmA |
Feb-08 |
4 |
1 |
1 |
Yes |
|
|
131 |
frmA |
Feb-08 |
4 |
1 |
1 |
Yes |
|
|
1738 |
lpd |
Feb-08 |
4 |
6 |
1 |
Yes |
|
|
11315 |
yajL |
Mar-08 |
4 |
1 |
1 |
Yes |
|
|
5052 |
ahpC |
Mar-08 |
4 |
1 |
1 |
Yes |
|
|
7001 |
ahpC |
Mar-08 |
4 |
1 |
1 |
Yes |
|
|
10935 |
ahpC |
Mar-08 |
4 |
1 |
1 |
Yes |
|
|
100 |
add |
Apr-08 |
4 |
6 |
1 |
Yes |
|
|
4860 |
xapA |
Apr-08 |
2 |
2 |
1 |
Yes |
|
|
2395 |
cyaY |
Apr-08 |
2 |
1 |
1 |
yes |
|
|
SOD2 (Gene ID:6648) |
sodA |
Apr-08 |
5 |
2 |
1 |
Yes |
|
|
6648 |
sodB |
Apr-08 |
6 |
6 |
1 |
Yes |
|
|
5018 |
yidC |
Apr-08 |
2 |
1 |
2 |
Yes |
|
|
6729 |
ffh |
Apr-08 |
2 |
2 |
2 |
Yes |
|
|
847 |
katE |
Apr-08 |
3 |
2 |
1 |
Yes |
|
|
498 |
atpA |
Apr-08 |
1 |
1 |
1 |
Yes |
|
|
4508 |
atpB |
Apr-08 |
1 |
1 |
1 |
Yes |
|
|
513 |
atpC |
Apr-08 |
1 |
1 |
1 |
Yes |
|
|
506 |
atpD |
Apr-08 |
1 |
1 |
1 |
Yes |
|
|
509 |
atpG |
Apr-08 |
1 |
1 |
1 |
Yes |
|
|
539 |
atpH |
Apr-08 |
1 |
1 |
1 |
Yes |
|
|
rppH |
Apr-08 |
2 |
2 |
1 |
yes |
||
|
TPI1 |
tpiA |
May-08 |
1 |
2 |
1 |
yes (12/22/08) |
|
|
RPS20 |
rpsJ |
May-08 |
2 |
2 |
2 |
yes (12/22/08) |
|
|
MDH2 |
mdh |
May-08 |
4 |
5 |
2 |
Yes need to annotate process term for TCA cycle |
|
|
DNAJA3 |
dnaJ |
May-08 |
5 |
2 |
2 |
yes |
|
|
RPS15A |
rpsH |
May-08 |
2 |
1 |
1 |
yes |
|
|
GALE |
galE |
May-08 |
1 |
4 |
1 |
Yes |
|
|
ADSS, ADSSL1 |
purA |
May-08 |
1 |
4 |
1 |
Yes |
|
|
NFU1 |
gntY |
May-08 |
|||||
|
PPAT |
purF |
May-08 |
3 |
2 |
1 |
Yes |
|
|
GCSH |
gcvH |
May-08 |
1 |
1 |
1 |
Yes |
|
|
SDHA |
sdhA |
May-08 |
3 |
3 |
2 |
yes |
|
|
PDXK |
pdxK |
May-08 |
6 |
1 |
|||
|
PDXK |
pdxY |
May-08 |
2 |
4 |
1 |
Yes |
|
|
UMPS |
pyrF |
May-08 |
2 |
1 |
1 |
Yes |
|
|
UMPS |
pyrE |
May-08 |
3 |
1 |
1 |
Yes |
|
|
CYB5R4 |
fpr |
May-08 |
2 |
2 |
1 |
Yes |
|
|
TARS, TARSL2 |
thrS |
May-08 |
7 |
3 |
1 |
Yes |
|
|
KARS |
lysS |
May-08 |
2 |
3 |
1 |
Yes |
|
|
KARS |
lysU |
May-08 |
4 |
3 |
1 |
Yes |
|
|
CHAC1, CHAC2 |
chaC |
May-08 |
Basic annotation completed by EcoCyc already |
||||
|
CARS |
cysS |
May-08 |
7 |
1 |
|||
|
GLUD1, GLUD2 |
gdhA |
May-08 |
1 |
1 |
1 |
Yes |
|
|
RPS3 |
rpsC |
Aug-08 |
3 |
1 |
2 |
Yes (12/22/08) |
|
|
RPS11 |
rpsQ |
Aug-08 |
3 |
2 |
2 |
Yes (12/22/08) |
|
|
RPS14 |
rpsK |
Aug-08 |
4 |
1 |
1 |
yes (12/22/08) |
|
|
NDUFV2 |
nuoE |
Sep-08 |
5 |
2 |
3 |
yes |
|
|
FLJ10769 |
yjeF |
Sep-08 |
|||||
|
PGAM2 |
gpmA |
Oct-08 |
1 |
||||
|
RPUSD2 |
rluA |
Oct-08 |
1 |
6 |
|||
|
RPUSD2 |
rluC |
Oct-08 |
1 |
4 |
|||
|
RPUSD2 |
truC |
Oct-08 |
1 |
4 |
|||
|
C21orf33 |
elbB |
Nov-08 |
2 |
||||
|
C22orf28 |
rtcB (yhgL) |
Nov-08 |
|||||
|
C9orf103 |
idnK (gntV) |
Nov-08 |
|||||
|
C9orf97, OVCA2 |
yceA |
Nov-08 |
|||||
|
CEP250 |
mukB |
Nov-08 |
6 |
4 |
1 |
Yes |
|
|
CUTC |
cutC |
Nov-08 |
3 |
||||
|
DERA |
deoC |
Nov-08 |
2 |
3 |
|||
|
FGGY |
araB |
Nov-08 |
3 |
3 |
1 |
yes |
|
|
C9orf103 |
gntK |
Nov-08 |
2 |
||||
|
CLPX (GeneID: 10845) |
P0A6H1 |
Dec-08 |
|||||
|
CRYZL1 |
P28304 qor (hcz, b4051) |
Feb-09 |
1 |
||||
|
CLPB (GeneID: 81570) |
P63284 |
Dec-08 |
3 |
||||
|
CSP1 |
P00968 carA (pyrA, b0033) |
Feb-09 |
5 |
3 |
2 |
Yes |
|
|
ALDH1A1 |
P23833 (puuC, aldH, b1300) |
Mar-09 |
1 |
1 |
|||
|
ALDH1A1 |
P80668 (feaB, maoB, padA, ydbG, b1385) |
Mar-09 |
4 |
4 |
|||
|
CBS |
P0ABK5 (cysK) |
Mar-09 |
1 |
1 |
1 |
Yes |
|
|
DLD |
P0A9P0 (lpd) |
Mar-09 |
11 |
7 |
5 |
Yes |
|
|
HEM1 |
P0AB77 (kbl) |
Mar-09 |
4 |
1 |
|||
|
HEM2 |
hemB |
Mar-09 |
1 |
1 |
1 |
Yes |
|
|
HEM3 |
hemC |
Mar-09 |
1 |
3 |
1 |
Yes |
|
|
DCUP |
hemE |
Mar-09 |
2 |
3 |
|||
|
HEM6 |
hemF |
Mar-09 |
4 |
1 |
1 |
Yes |
|
|
HEMH |
hemH |
Mar-09 |
|||||
|
no human gene (ORTHOMCL7668) |
P77671 (allB) |
May-09 |
5 |
1 |
1 |
Yes |
|
|
no human gene (ORTHOMCL5480) |
P33025 (yeiN) |
May-09 |
1 |
1 |
|||
|
no human gene (ORTHOMCL10848) |
P75876 (rimI, aka yccW) |
May-09 |
2 |
2 |
|||
|
no human gene (ORTHOMCL14289) |
P23522 (garL, aka yhaF) |
May-09 |
3 |
3 |
1 |
Yes |
|
|
no human gene (ORTHOMCL14289) |
P76469 (kdrA, aka yfaU) |
May-09 |
4 |
1 |
1 |
Yes |
|
|
no human gene (ORTHOMCL18742) |
P33919 (yejH, aka yejI, yejJ) |
May-09 |
|||||
|
no human gene (ORTHOMCL18767) |
P37610 (tauD, aka ssiD, yaiG) |
May-09 |
4 |
1 |
1 |
Yes |
|
|
no human gene (ORTHOMCL6749) |
P46891 (cof) |
May-09, Jun-09 |
3 |
1 |
|||
|
no human gene (ORTHOMCL6749) |
P27848 (yigL) |
May-09, Jun-09 |
4 |
0 |
0 |
||
|
no human gene (ORTHOMCL6749) |
P21829 (ybhA) |
May-09, Jun-09 |
7 |
cellular function not known as of 7/09 |
0 |
Yes |
Yes, as of 7/09 |
|
no human gene (ORTHOMCL6749) |
P0A8Y5 (yidA) |
May-09, Jun-09 |
3 |
biological function not known as of 7/09 |
0 |
yes |
yes, as of 7/09 |
|
SER2 (ORTHOMCL1779) |
P0AGB0 (serB) |
Jun-09 |
3 |
2 |
1 |
Yes |
|
|
CORL2 (ORTHOMCL30548) |
P32687 (yjbF) |
Jun-09 |
1 |
1 |
|||
|
CORL2 (ORTHOMCL30548) |
P75884 (gfcB) |
Jun-09 |
|||||
|
no human gene |
P10408 (secA) |
Jul-09 |
3 |
4 |
4 |
Yes |
|
|
SLC34A1 (PANTHER10010) |
P0A9K7 (phoU) |
Jul-09 |
1 |
||||
|
SLC34A1 (PANTHER10010) |
P0AF43 (yjbB) |
Jul-09 |
|||||
|
prosc (PANTHER10146) |
P67080 (yggS) |
Jul-09 |
|||||
|
LIN28 (PANTHER11544) |
P0A9X9 (cspA) |
Jul-09 |
8 |
7 |
|||
|
LIN28 (PANTHER11544) |
P36995 (cspB) |
Jul-09 |
|||||
|
LIN28 (PANTHER11544) |
P0A9Y6 (cspC) |
Jul-09 |
1 |
1 |
|||
|
LIN28 (PANTHER11544) |
P0A968 (cspD) |
Jul-09 |
|||||
|
LIN28 (PANTHER11544) |
P0A972 (cspE) |
Jul-09 |
5 |
1 |
|||
|
LIN28 (PANTHER11544) |
P0A976 (cspF) |
Jul-09 |
|||||
|
LIN28 (PANTHER11544) |
P0A978 (cspG) |
Jul-09 |
1 |
||||
|
LIN28 (PANTHER11544) |
P0A982 (cspH) |
Jul-09 |
|||||
|
LIN28 (PANTHER11544) |
P0A986 (cspI) |
Jul-09 |
|||||
|
PANTHER10314 (P35520 CBS_HUMAN) |
P0ABK5 (cysK) |
Jul-09 |
4 |
4 |
5 |
Yes |
|
|
PANTHER10314 (P35520 CBS_HUMAN) |
P16703 (cysM) |
Jul-09 |
3 |
3 |
|||
|
PANTHER10314 |
P76316 (dcyD aka yedO) |
Jul-09 |
3 |
3 |
|||
|
PANTHER10314 |
P00926 (dsdA) |
Jul-09 |
3 |
1 |
1 |
Yes |
|
|
PANTHER10314 |
P66899 (ygeX) |
Jul-09 |
1 |
1 |
|||
|
PANTHER10314 (Q9GZT4 SRR_HUMAN) |
P0AGF6 (tdcB) |
Jul-09 |
6 |
5 |
1 |
Yes |
|
|
PANTHER10314 (Q9GZT4 SRR_HUMAN) |
P04968 (ilvA) |
Jul-09 |
7 |
5 |
1 |
Yes |
|
|
PTHR12383 |
P00803 (lepB) |
Aug-09 |
3 |
4 |
2 |
Yes |
|
|
PTHR10906 |
P0AGA2 (SecY) |
Sept-09 |
3 |
3 |
2 |
Yes |
|
|
PANTHER10314 (Q86YJ6 THNS2_HUMAN; Q8IYQ7 THNS1_HUMAN) |
P00934 (thrC) |
Jul-09 |
3 |
2 |
|||
|
PTHR20856 |
P0A8V2 (rpoB) |
Sept-09 |
1 |
1 |
|||
|
PANTHER10314 |
P0A877 (trpA) |
Jul-09 |
3 |
2 |
1 |
Yes |
|
|
PTHR24096 |
P31552 (caiC) |
Sept-09 |
2 |
||||
|
PANTHER10314 |
P0A879 (trpB) |
Jul-09 |
3 |
2 |
1 |
Yes |
|
|
PTHR24096 |
P69451 (fadD) |
Sept-09 |
4 |
3 |
1 |
Yes |
|
|
PTHR24096 |
P37353 (menE) |
Sept-09 |
3 |
2 |
|||
|
PTHR24096 |
P31119 (aas) |
Sept-09 |
2 |
2 |
1 |
Yes |
|
|
PTHR12563 |
P0A7A7 (plsB) |
Oct-09 |
1 |
2 |
3 |
Yes |
|
|
PTHR20854 |
P22255 (cysQ) |
Oct-09 |
2 |
1 |
1 |
Yes |
|
|
PTHR20854 |
P0ADG4 (suhB) |
Oct-09 |
5 |
1 |
|||
|
PTHR10949 |
P60716 (lipA) |
Oct-09 |
3 |
2 |
1 |
Yes |
|
|
PTHR23151 |
P06959 (aceF) |
Oct-09 |
11 |
2 |
3 |
Yes |
|
|
PTHR23151 |
P0AFG6 (sucB) |
Oct-09 |
5 |
1 |
1 |
Yes |
|
|
PTHR12835 |
P06709 (birA) |
Oct-09 |
3 |
1 |
1 |
Yes |
|
|
PTHR11902 |
P0A6P9 (eno) |
Oct-09 |
5 |
1 |
3 |
Yes |
|
|
AQP1 |
P60844 (apqZ) |
Feb-10 |
1 |
3 |
2 |
Yes |
|
|
DUSP6 |
P76093 (ynbD) |
Feb-10 |
0 |
0 |
1 (ISM) |
No papers as of 6/24/10 |
No papers as of 6/24/10. |
|
TAP2 |
P77265 (mdlA) |
Feb-10 |
|||||
|
TAP2 |
P60752 (msbA) |
Feb-10 |
7 |
1 |
2 |
Yes |
|
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