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{|{{Prettytable}} width='30%' align = | [[Category:E. coli Databases]] | ||
[[Category:Bacterial Databases]] | |||
[[Category:IECA Portal]] | |||
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{| {{Prettytable}} width='30%' align="right" id="D4a24b6e443e17" class=" tableEdit Database_table" | |||
|- | |- | ||
!align=left {{table heading style}} |Link/URL: | |||
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http://www.ericbrc.org | |||
|- | |- | ||
!align=left {{table heading style}} |What: | |||
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Enteropathogen Resource Integration Center | |||
|- | |- | ||
| | !align=left {{table heading style}} |Who: | ||
| SRA International | || | ||
*Nicole Perna | |||
*John Greene | |||
*Fred Blattner | |||
*SRA International | |||
*Genome Center of Wisconsin | |||
|- | |- | ||
| Updates | !align=left {{table heading style}} |Updates: | ||
| | || | ||
|- | |- | ||
| Upcoming events | !align=left {{table heading style}} |Upcoming events: | ||
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|- | |- | ||
| Web Services | !align=left {{table heading style}} |Web Services: | ||
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|- class="tableEdit_footer" | |||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.1663.D4a24b6e443e17&page=1663&pagename={{FULLPAGENAMEE}}&type=1&template=Database_table edit table]</span> || | |||
|} | |} | ||
=About {{PAGENAME}}= | <!--box uid=63ce1649aab8b3180235b0af7618f667.1663.D4a24b6e443e17--></protect> | ||
= | ==About {{PAGENAME}}== | ||
=Using {{PAGENAME}}= | [[Image:ERIC_home.jpg|right|Home Page|thumb|300px]] | ||
==Browsing== | [http://www.ericbrc.org/portal/eric/ {{PAGENAME}}] is one of eight Bioinformatics Resource Centers (BRC) for Biodefense and Emerging/Re-Emerging Infectious Diseases. Funded by the National Institute of Allergy and Infectious Diseases (NIAID), ERIC serves as an information resource for five members of the bacterial family ''Enterobacteriaceae''. | ||
Access genome-specific information from list of genomes. | |||
==Searching== | ==Content== | ||
==Usage examples== | Information on diarrheagenic ''E.coli'' as well as on the related pathogens ''Salmonella'', ''Shigella'', Y''ersinia enterocolitica'', and ''Yersinia pestis''. For comparative genomics purposes, ERIC also contains information on related organisms, such as other pathogenic strains and laboratory strains of ''E.coli''. | ||
==Using {{PAGENAME}}== | |||
===Browsing=== | |||
Access genome-specific information from list of genomes, using the ASAP system developed in Nicole Perna's lab at UWisconsin-Madison. ASAP allows community annotation of genes, which are subject to curation. | |||
===Searching=== | |||
ERIC allows searching from the portal as well as from within the ASAP annotation subsystem. | |||
===Usage examples=== | |||
''Add links to additional pages describing success stories here.'' | ''Add links to additional pages describing success stories here.'' | ||
=Other sites with related content= | ==Other sites with related content== | ||
=Technology= | ==Technology== | ||
==Web Services/API== | ERIC runs a JBoss portal on Sun hardware running Solaris, using Oracle 10g Enterprise Edition as the relational database. In addition to the ASAP genome annotation subsystem, ERIC allows genome visualization via the Open Source GBrowse application, genome comparison via Mauve, and microarray analysis using the mAdb system developed at NIH's Center for Information Technology. | ||
=Discussion= | |||
ERIC recently added text mining of PubMed abstracts using SRA's NetOwl Extractor technology, which is based on Natural Language Processing (NLP) to extract entities, and more importantly relationships between these entities, from unstructured text. | |||
===Web Services/API=== | |||
To be developed. [mailto://info@ericbrc.org Contact us] for methods of direct interaction with ERIC systems. | |||
==Discussion== | |||
=References= | ==References== | ||
=External Links= | {{BacktoTop}} | ||
{{RefHelp}} | |||
<references /> | |||
Glasner, J.D., Plunkett III, G., Anderson, B., Baumler, D., Biehl, B., Burland, V., Cabot, E., Darling, A., Mau, B., Neeno-Eckwall, E., Pot, D. Yu Qiu, Y., Rissman, A., Sam Zaremba, S., Fedorko, J., Liss, P., Rusch, M., Shaker, M., Shaull, L., Shetty, P., Whitmore, J., Blattner, F.R., Greene, J.M., and Perna, N.T. (2008) Enteropathogen Resource Integration Center (ERIC) – bioinformatics support for research on biodefense-relevant enterobacteria. Nucleic Acids Research 36:D519-D523. | |||
==External Links== | |||
[http://www.ericbrc.org/portal/eric/ {{PAGENAME}}] | [http://www.ericbrc.org/portal/eric/ {{PAGENAME}}] | ||
ASAP | <br>ASAP | ||
==Discussion of {{PAGENAME}} on other websites== | ===Discussion of {{PAGENAME}} on other websites=== | ||
Latest revision as of 00:11, 23 May 2010
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| Link/URL: | |
|---|---|
| What: |
Enteropathogen Resource Integration Center |
| Who: |
|
| Updates: | |
| Upcoming events: | |
| Web Services: |
|
| edit table |
About ERIC
ERIC is one of eight Bioinformatics Resource Centers (BRC) for Biodefense and Emerging/Re-Emerging Infectious Diseases. Funded by the National Institute of Allergy and Infectious Diseases (NIAID), ERIC serves as an information resource for five members of the bacterial family Enterobacteriaceae.
Content
Information on diarrheagenic E.coli as well as on the related pathogens Salmonella, Shigella, Yersinia enterocolitica, and Yersinia pestis. For comparative genomics purposes, ERIC also contains information on related organisms, such as other pathogenic strains and laboratory strains of E.coli.
Using ERIC
Browsing
Access genome-specific information from list of genomes, using the ASAP system developed in Nicole Perna's lab at UWisconsin-Madison. ASAP allows community annotation of genes, which are subject to curation.
Searching
ERIC allows searching from the portal as well as from within the ASAP annotation subsystem.
Usage examples
Add links to additional pages describing success stories here.
Technology
ERIC runs a JBoss portal on Sun hardware running Solaris, using Oracle 10g Enterprise Edition as the relational database. In addition to the ASAP genome annotation subsystem, ERIC allows genome visualization via the Open Source GBrowse application, genome comparison via Mauve, and microarray analysis using the mAdb system developed at NIH's Center for Information Technology.
ERIC recently added text mining of PubMed abstracts using SRA's NetOwl Extractor technology, which is based on Natural Language Processing (NLP) to extract entities, and more importantly relationships between these entities, from unstructured text.
Web Services/API
To be developed. Contact us for methods of direct interaction with ERIC systems.
Discussion
References
See Help:References for how to manage references in EcoliWiki.
Glasner, J.D., Plunkett III, G., Anderson, B., Baumler, D., Biehl, B., Burland, V., Cabot, E., Darling, A., Mau, B., Neeno-Eckwall, E., Pot, D. Yu Qiu, Y., Rissman, A., Sam Zaremba, S., Fedorko, J., Liss, P., Rusch, M., Shaker, M., Shaull, L., Shetty, P., Whitmore, J., Blattner, F.R., Greene, J.M., and Perna, N.T. (2008) Enteropathogen Resource Integration Center (ERIC) – bioinformatics support for research on biodefense-relevant enterobacteria. Nucleic Acids Research 36:D519-D523.
External Links
ERIC
ASAP