View source for T4-like genome database

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[[Category:Databases]]
[[Category:Bacteriophage Databases]]

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!align=left {{table heading style}} |Link/URL:
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http://phage.ggc.edu/
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!align=left {{table heading style}} |What:
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Genome information about T4-like bacteriophage
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!align=left {{table heading style}} |Who:
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Jim Nolan
Georgia Gwinnett College
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!align=left {{table heading style}} |Updates:
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!align=left {{table heading style}} |Upcoming events:
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!align=left {{table heading style}} |Web Services:
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==About {{PAGENAME}}==
[http://phage.bioc.tulane.edu/ {{PAGENAME}}] is a site with genome browsers for the annotated genomes of a set of T4-like bacteriophage sequenced at Tulane and elsewhere.  The website moved from Tulane to Georgia Gwinnett College.

==Content==
Genome data and [http://www.gmod.org/wiki/index.php/Gbrowse GBrowse]-based browsers for T4 family members Bacteriophage RB14, RB32, Acinetobacter phage 133, Aeromonas phage 25, Aeromonas phage 65, Vibrio phage nt-1, bacteriophage phi-1, RB16, RB43, Phage 31, 44RR2.8t, Aeh1, RB49, RB69, T4, P-SSM2, P-SSM4, S-PM2, KVP40.  There is also a local BLAST for T4-like phage genomes and a forum for discussion of phage biology and genomics.

==Using {{PAGENAME}}==
===Browsing===
The home page lists each of the phage genomes covered and links to their GBrowse pages, a more classic but noninteractive graphical map, FASTA files for proteins, RNAs, and genomes, and links to the NCBI browser and [[Genbank]] pages.  Clicking on a gene in the browser brings up a summary page that has much more than the standard GBrowse data page.  The data for each gene includes the DNA and protein sequences, statistics about the protein, a popup alignment viewer, and a White-Wimley hydropathy plot.

Tracks in the browser include BLAST hits to the other covered genomes.  Clicking on these takes you to the browser for the other phage.
===Searching===
Searching is via the GBrowse search box
===Usage examples===

==Other sites with related content==
==Technology==
[[GBrowse]] plus analysis packages used to generate annotation tracks.

===Web Services/API===
GBrowse includes a Moby interface.  Not documented whether it works on this site.

==Discussion==


==References==
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==External Links==
[http://phage.bioc.tulane.edu/ {{PAGENAME}}] URL: http://phage.bioc.tulane.edu
===Discussion of {{PAGENAME}} on other websites===