View source for Cis Element:Phage lambda ori

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==Cis element summary table==
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!align=left {{table_heading_style}} |Standard Name
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''Lambda ori''
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!align=left {{table_heading_style}} |Synonyms
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!align=left {{table_heading_style}} |Function
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Initiation control site for replication of the lambda genome
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!align=left {{table_heading_style}} |Location
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within ''O'' gene
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!align=left {{table_heading_style}} |SO terms
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===Notes===

== Location and Sequence ==
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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Phage Lambda (NC_001416)
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NC_001416: 39034..39137<br />{{GBrowseFigureByCoord|39024|39147|bacteriophage_lambda|NC_001416}} 

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{{GBrowseLink|bacteriophage_lambda|NC_001416|39034|39137|Gbrowse (Bacteriophage lambda)}}
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{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|39034|39137|FASTA Dump}} 

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===Notes===
* The lambda ''ori'' has 4 repeated segments (commonly referred to as 'iterons') located at the following coordinates<ref name='PMID:6455332'/>:
#* ori1 - nt 39034 - 39051
#* ori2 - nt 39054 - 39071
#* ori3 - nt 39078 - 39095
#* ori4 - nt 39101 - 39118

Below is the location of each of the ''ori'' iteron (underlined) in the lambda genomic sequence <ref name='PMID:6455332'/> :
 <span style="font-size:larger;"><b>Lambda  nt39034  <u>ATCCCTCAAA ACGAGGGA</u>AA <u>ATCCCCTAAAA CGAGGGAT</u>AA AAC<u>ATCCCTC AAATTGGGGG ATTGCT</u>  39100
 Lambda  nt39101  <u>ATCCCTCAAA ACAGGGGG</u>AC ACAAAAGACA CTATTACAAA AGAAAAAAGA AAA   39153 </b></span>

== Interactions==
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!|Partner Type!!Partner!!Notes!!References!!Evidence
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Protein
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Phage lambda O protein
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PMID:6264392
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Purified O protein protects lambda DNA in the ''ori'' region from ExoIII nuclease digestion (FIgure 2) and DNase cleavage (Figure 4). 

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===Notes===

== Mutant alleles and phenotypes ==
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!|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments

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===Notes===

== Genetic Resources ==
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!|Resource!!Resource Type!!Source!!Notes/Reference

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===Notes===

== Accessions ==
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!|Database!!Accession!!Notes
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[[EcoCyc]]
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EcoCyc:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[[EcoGene]]
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EcoGene:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[[RegulonDB]]
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RegulonDB:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[[EchoBASE]]
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EchoBASE:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 
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[[ASAP]]
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ASAP:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] 

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===Notes===

==References==
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{{RefHelp}}
<references />

===Categories===
[[Category:Phage lambda:Cis_Element]]