ychM:Evolution

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Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000011370 (score: 1.000; bootstrap: 92%)
  • ENSANGP00000015362 (score: 0.296)
  • ENSANGP00000001419 (score: 0.253)
  • ENSANGP00000016593 (score: 0.234)
  • ENSANGP00000020886 (score: 0.218)
  • ENSANGP00000011503 (score: 0.216)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000021028 (score: 1.000; bootstrap: 99%)
  • ENSAPMP00000020873 (score: 0.381)
  • ENSAPMP00000028132 (score: 0.232)
  • ENSAPMP00000028209 (score: 0.218)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G13550 (score: 1.000; bootstrap: 100%)
  • AT3G12520 (score: 0.769)
  • AT4G08620 (score: 0.207)
  • AT1G22150 (score: 0.207)
  • AT1G78000 (score: 0.204)
  • AT4G02700 (score: 0.189)
  • AT3G51895 (score: 0.186)
  • AT1G23090 (score: 0.177)
  • AT3G15990 (score: 0.166)
  • AT5G19600 (score: 0.164)
  • AT1G77990 (score: 0.151)
  • AT5G10180 (score: 0.143)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000020324 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038579 (score: 1.000; bootstrap: 100%)
  • WBGene00041629 (score: 0.270)
  • WBGene00041630 (score: 0.242)
  • WBGene00035122 (score: 0.186)
  • WBGene00035342 (score: 0.175)
  • WBGene00037061 (score: 0.172)
  • WBGene00041248 (score: 0.169)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00013963 (score: 1.000; bootstrap: 100%)
  • WBGene00012259 (score: 0.262)
  • WBGene00010788 (score: 0.259)
  • WBGene00010789 (score: 0.255)
  • WBGene00018283 (score: 0.193)
  • WBGene00017464 (score: 0.192)
  • WBGene00020914 (score: 0.109)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000008453 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017235 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000011913 (score: 0.307)
  • ENSCINP00000004003 (score: 0.056)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-5349 (score: 1.000; bootstrap: 95%)
  • ZDB-CDNA-040425-1297 (score: 1.000; bootstrap: 95%)
  • ZDB-CDNA-040425-688 (score: 0.054)
  • ZDB-GENE-030131-1566 (score: 0.054)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0187041 (score: 1.000; bootstrap: 100%)
  • DDB0205679 (score: 0.185)
  • DDB0189750 (score: 0.121)
  • DDB0202939 (score: 0.088)
  • DDB0189760 (score: 0.059)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036240 (score: 1.000; bootstrap: 93%)
  • FBgn0013953 (score: 0.262)
  • FBgn0038337 (score: 0.222)
  • FBgn0039787 (score: 0.220)
  • FBgn0039789 (score: 0.216)
  • FBgn0039736 (score: 0.191)
  • FBgn0034275 (score: 0.190)
  • FBgn0038354 (score: 0.150)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19961-PA (score: 1.000; bootstrap: 93%)
  • GA20023-PA (score: 0.248)
  • GA21975-PA (score: 0.217)
  • GA19373-PA (score: 0.214)
  • GA21986-PA (score: 0.213)
  • GA20680-PA (score: 0.185)
  • GA18856-PA (score: 0.148)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000030099 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000024770 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000001879 (score: 0.488)
  • ENSGALP00000012971 (score: 0.410)
  • ENSGALP00000001816 (score: 0.405)
  • ENSGALP00000030087 (score: 0.318)
  • ENSGALP00000009258 (score: 0.311)
  • ENSGALP00000001068 (score: 0.258)
  • ENSGALP00000025622 (score: 0.179)
  • ENSGALP00000001235 (score: 0.172)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000355384 (score: 1.000; bootstrap: 93%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000022653 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000003812 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000004577 (score: 0.222)
  • ENSMMUP00000023186 (score: 0.218)
  • ENSMMUP00000025145 (score: 0.198)
  • ENSMMUP00000019278 (score: 0.191)
  • ENSMMUP00000015161 (score: 0.187)
  • ENSMMUP00000025603 (score: 0.122)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000002749 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Mus musculus

  • MGI:2444589 (score: 1.000; bootstrap: 97%)
  • MGI:2159728 (score: 0.062)

From Inparanoid:20070104

Oryza gramene

  • Q68UR2 (score: 1.000; bootstrap: 100%)
  • Q8S317 (score: 0.999)
  • Q8S318 (score: 0.216)
  • Q6Z9Y1 (score: 0.213)
  • Q8RUC3 (score: 0.213)
  • Q8H7X3 (score: 0.212)
  • Q40008 (score: 0.210)
  • Q84XE9 (score: 0.209)
  • Q43482 (score: 0.209)
  • Q8H2D8 (score: 0.204)
  • Q9XGB5 (score: 0.204)
  • Q9AT12 (score: 0.200)
  • Q8H0K2 (score: 0.199)
  • Q8H0K3 (score: 0.198)
  • Q8H0K6 (score: 0.194)
  • Q8H0K4 (score: 0.193)
  • Q8H7X7 (score: 0.193)
  • Q8H0K5 (score: 0.193)
  • Q8H2D7 (score: 0.193)
  • Q8H0J8 (score: 0.192)
  • Q9XGB6 (score: 0.183)
  • Q8H7X1 (score: 0.183)
  • Q8H0J9 (score: 0.181)
  • Q7XEI8 (score: 0.180)
  • Q5VQ79 (score: 0.175)
  • Q68UQ4 (score: 0.170)
  • Q8H7X4 (score: 0.169)
  • Q7X6I0 (score: 0.164)
  • Q942E2 (score: 0.158)
  • O04001 (score: 0.149)
  • Q8LR58 (score: 0.148)
  • Q8H7X0 (score: 0.143)
  • Q8H0K7 (score: 0.140)
  • Q68UQ3 (score: 0.093)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000029741 (score: 1.000; bootstrap: 78%)
  • ENSPTRP00000044720 (score: 0.363)
  • ENSPTRP00000033482 (score: 0.241)
  • ENSPTRP00000003196 (score: 0.195)
  • ENSPTRP00000039675 (score: 0.193)
  • ENSPTRP00000033528 (score: 0.099)
  • ENSPTRP00000042326 (score: 0.088)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000027762 (score: 1.000; bootstrap: 91%)
  • ENSRNOP00000015733 (score: 0.332)
  • ENSRNOP00000010350 (score: 0.316)
  • ENSRNOP00000009473 (score: 0.283)
  • ENSRNOP00000009742 (score: 0.279)
  • ENSRNOP00000024374 (score: 0.223)
  • ENSRNOP00000000047 (score: 0.202)
  • ENSRNOP00000041071 (score: 0.193)
  • ENSRNOP00000000615 (score: 0.183)
  • ENSRNOP00000008474 (score: 0.139)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR092W (score: 1.000; bootstrap: 100%)
  • YPR003C (score: 1.000; bootstrap: 100%)
  • YBR294W (score: 0.587)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC8695c (score: 1.000; bootstrap: 85%)
  • SPBC3H72 (score: 0.546)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000137551 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026258001 (score: 1.000; bootstrap: 73%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000004513 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Shigella flexneri

YCHM

From SHIGELLACYC

E. coli O157

YCHM

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01740 STAS domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:52091

Panther (EcoliWiki Page)

PTHR11814:SF52

Pfam (EcoliWiki Page)

PF00916 Sulfate transporter family

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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