From EcoliWiki
Jump to: navigation, search

You can help EcoliWiki by editing the content of this page. For information about becoming a registered user and obtaining editing privileges, see Help:Accounts.

See Help:Bioinformatics Tools for more information about tools in EcoliWiki.

Short Description

Share your knowledge and ideas. How you can help. See Help pages if you need help with using the wiki
Free software for motif finding/prediction based on free energy calculations. Run as perl scripts to that call the package. Can be used for motif prediction in RNA or DNA and is capable of converting between the two, default is RNA. Primary author Joshua Starmer.


Links to sites that run the software or where it can be obtained

Obtainable on SourceForge


Hardware/Software requirements, if applicable

User notes

Usage information and options can be viewed by type the name of the script followed by -h.

$ perl -h    

See Also


See Help:References for how to manage references in EcoliWiki. [1]

  1. Starmer, J et al. (2006) Predicting Shine-Dalgarno sequence locations exposes genome annotation errors. PLoS Comput. Biol. 2 e57 PubMed