caiA:Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000019082 (score: 1.000; bootstrap: 99%)
  • ENSANGP00000013168 (score: 0.322)
  • ENSANGP00000015771 (score: 0.175)
  • ENSANGP00000021837 (score: 0.133)
  • ENSANGP00000012480 (score: 0.056)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000031197 (score: 1.000; bootstrap: 99%)
  • ENSAPMP00000025701 (score: 0.116)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G45300 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000024017 (score: 0.162)
  • ENSBTAP00000009844 (score: 1.000; bootstrap: 99%)
  • ENSBTAP00000017188 (score: 0.126)
  • ENSBTAP00000004205 (score: 0.095)
  • ENSBTAP00000005782 (score: 0.074)
  • ENSBTAP00000003999 (score: 0.062)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00039091 (score: 1.000; bootstrap: 94%)
  • WBGene00033562 (score: 0.105)
  • WBGene00033579 (score: 0.096)
  • WBGene00033551 (score: 0.081)
  • WBGene00025544 (score: 0.058)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00015326 (score: 1.000; bootstrap: 94%)
  • WBGene00016943 (score: 0.101)
  • WBGene00019433 (score: 0.075)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000015398 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000018661 (score: 0.148)
  • ENSCAFP00000030246 (score: 0.135)
  • ENSCAFP00000013428 (score: 0.127)
  • ENSCAFP00000014350 (score: 0.094)
  • ENSCAFP00000020422 (score: 0.082)
  • ENSCAFP00000006464 (score: 0.074)
  • ENSCAFP00000023601 (score: 0.066)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000001629 (score: 1.000; bootstrap: 79%)
  • ENSCINP00000017142 (score: 1.000; bootstrap: 61%)
  • ENSCINP00000002142 (score: 0.125)
  • ENSCINP00000003052 (score: 0.093)
  • ENSCINP00000019524 (score: 0.078)
  • ENSCINP00000008564 (score: 0.064)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040808-64 (score: 1.000; bootstrap: 97%)
  • ZDB-GENE-040426-2210 (score: 1.000; bootstrap: 97%)
  • ZDB-CDNA-040425-3157 (score: 1.000; bootstrap: 97%)
  • ZDB-CDNA-040808-67 (score: 1.000; bootstrap: 97%)
  • ZDB-GENE-030616-262 (score: 1.000; bootstrap: 95%)
  • ZDB-CDNA-040425-429 (score: 1.000; bootstrap: 94%)
  • ZDB-CDNA-040625-185 (score: 1.000; bootstrap: 95%)
  • ZDB-CDNA-040425-1697 (score: 0.105)
  • ZDB-GENE-040426-771 (score: 0.105)
  • ZDB-CDNA-040625-47 (score: 0.104)
  • ZDB-CDNA-040425-3014 (score: 0.102)
  • ZDB-CDNA-040425-2892 (score: 0.101)
  • ZDB-GENE-040426-1945 (score: 0.101)
  • ZDB-CDNA-040425-1756 (score: 0.101)
  • ZDB-GENE-040426-828 (score: 0.101)
  • ZDB-CDNA-050522-298 (score: 0.099)
  • ZDB-GENE-041008-219 (score: 0.075)
  • ZDB-CDNA-040425-3118 (score: 0.058)
  • ZDB-GENE-030131-899 (score: 0.058)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230189 (score: 1.000; bootstrap: 99%)
  • DDB0185291 (score: 0.115)
  • DDB0219367 (score: 0.078)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0038742 (score: 1.000; bootstrap: 99%)
  • FBgn0037999 (score: 0.516)
  • FBgn0036824 (score: 0.170)
  • FBgn0035811 (score: 0.100)
  • FBgn0035911 (score: 0.098)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18369-PA (score: 1.000; bootstrap: 99%)
  • GA18485-PA (score: 0.543)
  • GA17761-PA (score: 0.187)
  • GA19744-PA (score: 0.124)
  • GA11516-PA (score: 0.114)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000011441 (score: 1.000; bootstrap: 95%)
  • ENSGALP00000015708 (score: 1.000; bootstrap: 83%)
  • ENSGALP00000028954 (score: 0.194)
  • ENSGALP00000007454 (score: 0.156)
  • ENSGALP00000002364 (score: 0.132)
  • ENSGALP00000015482 (score: 0.095)
  • ENSGALP00000008056 (score: 0.092)
  • ENSGALP00000004548 (score: 0.084)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000242592 (score: 1.000; bootstrap: 99%)
  • ENSP00000346877 (score: 0.175)
  • ENSP00000235701 (score: 0.140)
  • ENSP00000249760 (score: 0.131)
  • ENSP00000281182 (score: 0.118)
  • ENSP00000312618 (score: 0.074)
  • ENSP00000233710 (score: 0.055)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000027174 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000000920 (score: 0.171)
  • ENSMMUP00000009469 (score: 0.144)
  • ENSMMUP00000018989 (score: 0.133)
  • ENSMMUP00000009311 (score: 0.123)
  • ENSMMUP00000008358 (score: 0.079)
  • ENSMMUP00000013785 (score: 0.051)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003655 (score: 1.000; bootstrap: 95%)
  • ENSMODP00000000393 (score: 0.136)
  • ENSMODP00000023827 (score: 0.128)
  • ENSMODP00000006758 (score: 0.095)
  • ENSMODP00000010524 (score: 0.070)
  • ENSMODP00000008065 (score: 0.069)
  • ENSMODP00000019737 (score: 0.061)

From Inparanoid:20070104

Mus musculus

  • MGI:87868 (score: 1.000; bootstrap: 98%)
  • MGI:1914135 (score: 0.156)
  • MGI:87867 (score: 0.154)
  • MGI:1929242 (score: 0.145)
  • MGI:1914198 (score: 0.140)
  • MGI:1914272 (score: 0.083)
  • MGI:87866 (score: 0.067)

From Inparanoid:20070104

Oryza gramene

  • Q75IM9 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000009412 (score: 1.000; bootstrap: 96%)
  • ENSPTRP00000001508 (score: 0.137)
  • ENSPTRP00000011814 (score: 0.129)
  • ENSPTRP00000007690 (score: 0.121)
  • ENSPTRP00000026466 (score: 0.074)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000001556 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000027999 (score: 0.148)
  • ENSRNOP00000013238 (score: 0.144)
  • ENSRNOP00000013829 (score: 0.136)
  • ENSRNOP00000017686 (score: 0.076)
  • ENSRNOP00000019108 (score: 0.075)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000131936 (score: 1.000; bootstrap: 99%)
  • NEWSINFRUP00000160477 (score: 1.000; bootstrap: 98%)
  • NEWSINFRUP00000160814 (score: 0.123)
  • NEWSINFRUP00000175290 (score: 0.118)
  • NEWSINFRUP00000169342 (score: 0.105)
  • NEWSINFRUP00000176454 (score: 0.079)
  • NEWSINFRUP00000144126 (score: 0.071)
  • NEWSINFRUP00000158840 (score: 0.051)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025379001 (score: 1.000; bootstrap: 96%)
  • GSTENP00032196001 (score: 1.000; bootstrap: 95%)
  • GSTENP00012530001 (score: 0.126)
  • GSTENP00030024001 (score: 0.092)
  • GSTENP00012133001 (score: 0.083)
  • GSTENP00014188001 (score: 0.072)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000045054 (score: 1.000; bootstrap: 80%)
  • ENSXETP00000026824 (score: 0.275)
  • ENSXETP00000039754 (score: 0.174)
  • ENSXETP00000017649 (score: 0.155)
  • ENSXETP00000006513 (score: 0.136)
  • ENSXETP00000048685 (score: 0.114)
  • ENSXETP00000043405 (score: 0.114)
  • ENSXETP00000035066 (score: 0.113)
  • ENSXETP00000003600 (score: 0.100)
  • ENSXETP00000021089 (score: 0.093)
  • ENSXETP00000040469 (score: 0.086)
  • ENSXETP00000002367 (score: 0.077)
  • ENSXETP00000018266 (score: 0.060)
  • ENSXETP00000026243 (score: 0.053)

From Inparanoid:20070104

Shigella flexneri

CAIA

From SHIGELLACYC

E. coli O157

CAIA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00441 Acyl-CoA dehydrogenase, C-terminal domain

Pfam (EcoliWiki Page)

PF02770 Acyl-CoA dehydrogenase, middle domain

Pfam (EcoliWiki Page)

PF02771 Acyl-CoA dehydrogenase, N-terminal domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:47203

Panther (EcoliWiki Page)

PTHR10909:SF10

Superfamily (EcoliWiki Page)

SUPERFAMILY:56645

EcoCyc

EcoCyc:EG11560

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11560

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001513

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1521

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000139

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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