PMID:9146961
| Citation |
Wozniak, A (1997) Using video-oriented instructions to speed up sequence comparison. Comput. Appl. Biosci. 13:145-50 |
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| Abstract |
This document presents an implementation of the well-known Smith-Waterman algorithm for comparison of proteic and nucleic sequences, using specialized video instructions. These instructions, SIMD-like in their design, make possible parallelization of the algorithm at the instruction level. |
| Links | |
| Keywords |
Algorithms; Computer Terminals; Computer-Assisted Instruction/methods; Databases, Factual; Evaluation Studies as Topic; Nucleic Acids/genetics; Proteins/genetics; Sequence Alignment/methods; Sequence Alignment/statistics & numerical data; Sequence Homology, Amino Acid; Sequence Homology, Nucleic Acid; Software |
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