PMID:1720671

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Citation

Brimacombe, R RNA-protein interactions in the Escherichia coli ribosome. Biochimie 73:927-36

Abstract

Over the last two decades essentially three different approaches have been used to study the topography of RNA-protein interactions in the ribosome. These are: (a) the analysis of binding sites for individual ribosomal proteins or groups of proteins on the RNA; (b) the determination of protein footprint sites on the RNA by the application of higher order structure analytical techniques; and (c) the localisation of RNA-protein cross-link sites on the RNA. This article compares and contrasts the types of data that the three different approaches provide, and gives a brief and highly simplified summary of the results that have been obtained for both the 16S and 23S ribosomal RNA from E coli.

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Keywords

Bacterial Proteins/metabolism; Base Sequence; Binding Sites; Escherichia coli/chemistry; Escherichia coli/metabolism; Molecular Sequence Data; Nucleic Acid Conformation; Protein Binding; RNA, Bacterial/chemistry; RNA, Bacterial/metabolism; RNA, Ribosomal/chemistry; RNA, Ribosomal/metabolism; RNA, Ribosomal, 16S/chemistry; RNA, Ribosomal, 16S/metabolism; RNA, Ribosomal, 23S/chemistry; RNA, Ribosomal, 23S/metabolism; Ribosomal Proteins/metabolism; Ribosomes/metabolism

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