PMID:16939790
| Citation |
Saeed, AI, Bhagabati, NK, Braisted, JC, Liang, W, Sharov, V, Howe, EA, Li, J, Thiagarajan, M, White, JA and Quackenbush, J (2006) TM4 microarray software suite. Meth. Enzymol. 411:134-93 |
|---|---|
| Abstract |
Powerful specialized software is essential for managing, quantifying, and ultimately deriving scientific insight from results of a microarray experiment. We have developed a suite of software applications, known as TM4, to support such gene expression studies. The suite consists of open-source tools for data management and reporting, image analysis, normalization and pipeline control, and data mining and visualization. An integrated MIAME-compliant MySQL database is included. This chapter describes each component of the suite and includes a sample analysis walk-through. |
| Links |
PubMed Online version:10.1016/S0076-6879(06)11009-5 |
| Keywords |
Algorithms; Animals; Gene Expression Profiling/methods; Gene Expression Profiling/statistics & numerical data; Humans; Oligonucleotide Array Sequence Analysis/methods; Oligonucleotide Array Sequence Analysis/statistics & numerical data; Software |
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