PMID:16844709
| Citation |
Wang, H, Su, Y, Mackey, AJ, Kraemer, ET and Kissinger, JC (2006) SynView: a GBrowse-compatible approach to visualizing comparative genome data. Bioinformatics 22:2308-9 |
|---|---|
| Abstract |
We present SynView, a simple and generic approach to dynamically visualize multi-species comparative genome data. It is a light-weight application based on the popular and configurable web-based GBrowse framework. It can be used with a variety of databases and provides the user with a high degree of interactivity. The tool is written in Perl and runs on top of the GBrowse framework. It is in use in the PlasmoDB (http://www.PlasmoDB.org) and the CryptoDB (http://www.CryptoDB.org) projects and can be easily integrated into other cross-species comparative genome projects. AVAILABILITY: The program and instructions are freely available at http://www.ApiDB.org/apps/SynView/ CONTACT: jkissing@uga.edu. |
| Links |
PubMed Online version:10.1093/bioinformatics/btl389 |
| Keywords |
Algorithms; Chromosome Mapping/methods; Computer Graphics; Genome/genetics; Sequence Alignment/methods; Sequence Analysis, DNA/methods; Software; Species Specificity; User-Computer Interface |
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