PMID:15509602

Citation	Sabatti, C, Rohlin, L, Lange, K and Liao, JC (2005) Vocabulon: a dictionary model approach for reconstruction and localization of transcription factor binding sites. Bioinformatics 21:922-31
Abstract	Gene expression arrays enable measurements of transcription values for a large number or all genes in the genome. In order to better interpret these results and to use them to reconstruct transcription networks, information on location of binding sites for regulatory proteins in the entire genome is needed. In particular, this represents an open problem in Escherichia coli.
Links	PubMed Online version:10.1093/bioinformatics/bti083
Keywords	Algorithms; Binding Sites; Models, Chemical; Models, Genetic; Models, Statistical; Protein Binding; Sequence Alignment/methods; Sequence Analysis, DNA/methods; Software; Transcription Factors/chemistry; Transcription Factors/genetics; Transcription Factors/metabolism
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