PMID:14759262

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Citation

Kurtz, S, Phillippy, A, Delcher, AL, Smoot, M, Shumway, M, Antonescu, C and Salzberg, SL (2004) Versatile and open software for comparing large genomes. Genome Biol. 5:R12

Abstract

The newest version of MUMmer easily handles comparisons of large eukaryotic genomes at varying evolutionary distances, as demonstrated by applications to multiple genomes. Two new graphical viewing tools provide alternative ways to analyze genome alignments. The new system is the first version of MUMmer to be released as open-source software. This allows other developers to contribute to the code base and freely redistribute the code. The MUMmer sources are available at http://www.tigr.org/software/mummer.

Links

PubMed PMC395750 Online version:10.1186/gb-2004-5-2-r12

Keywords

Animals; Anopheles/genetics; Computer Graphics; Drosophila/genetics; Genome; Genome, Fungal; Genome, Human; Genomics/methods; Humans; Sequence Alignment/methods; Software

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