PMID:10411129
| Citation |
Muth, GW, Hennelly, SP and Hill, WE (1999) Positions in the 30S ribosomal subunit proximal to the 790 loop as determined by phenanthroline cleavage. RNA 5:856-64 |
|---|---|
| Abstract |
Positioning rRNA within the ribosome remains a challenging problem. Such positioning is critical to understanding ribosome function, as various rRNA regions interact to form suitable binding sites for ligands, such as tRNA and mRNA. We have used phenanthroline, a chemical nuclease, as a proximity probe, to help elucidate the regions of rRNA that are near neighbors of the stem-loop structure centering at nt 790 in the 16S rRNA of the Escherichia coli 30S ribosomal subunit. Using phenanthroline covalently attached to a DNA oligomer complementary to nt 787-795, we found that nt 582-584, 693-694, 787-790, and 795-797 were cleaved robustly and must lie within about 15 A of the tethered site at the 5' end of the DNA oligomer, which is adjacent to nt 795 of 16S rRNA. |
| Links | |
| Keywords |
Base Sequence; DNA Primers; Escherichia coli/genetics; Models, Molecular; Nucleic Acid Conformation; Phenanthrolines/chemistry; RNA Probes; RNA, Ribosomal, 16S/chemistry; Ribosomes/chemistry |
| edit table |
Significance
You can help EcoliWiki by summarizing why this paper is useful
Useful Materials and Methods
You can help Ecoliwiki by describing the useful materials (strains, plasmids, antibodies, etc) described in this paper.
Annotations
<annotationlinks/>
EcoliWiki Links
Add links to pages that link here (e.g. gene, product, method pages)
References
See Help:References for how to manage references in EcoliWiki.