Eukaryotic Pathogen Database Resources (EuPathDB)
You can help EcoliWiki by editing the content of this page. For information about becoming a registered user and obtaining editing privileges, see Help:Accounts.
<protect>
| Link/URL: | |
|---|---|
| What: |
A portal for accessing genomic-scale datasets associated with the eukaryotic pathogens. |
| Who: |
EuPath Project Team |
| Updates: |
Last Updated: March 2009 |
| Upcoming events: | |
| Web Services: |
|
| edit table |
</protect> See Help:Database_table for how to add or edit information in this section of EcoliWiki.
Contents
About Eukaryotic Pathogen Database Resources (EuPathDB)
The Eukaryotic Pathogen Database Resources (EuPathDB) is the portal database for eukaryotic pathogen genomic databases. EuPathDB is one of four bioinformatics resource centers (BRC). As of November 2009, members of EuPathDB include CryptoDB (functional genomic resource for Cryptosporidium parasites), GiardiaDB (functional genomic resource for Giardia parasites), PlasmoDB (functional genomic resource for Plasmodium parasites), ToxoDB (functional genomic resource for Toxoplasma and "Neospora" parasites), TriTrypDB (functional genomic resource for Trypanosomatid parasites) and TrichDB (functional genomic resource for Trichomonas parasites). The EuPathDB BRC is a National Institutes of Health funded project, with additional funding for the TriTrypDB component coming from the Bill and Melinda Gates foundation.
Content
Using Eukaryotic Pathogen Database Resources (EuPathDB)
Browsing
Searching
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
References
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14]
- ↑ Aurrecoechea, C et al. (2010) EuPathDB: a portal to eukaryotic pathogen databases. Nucleic Acids Res. 38 D415-9 PubMed
- ↑ Aslett, M et al. (2010) TriTrypDB: a functional genomic resource for the Trypanosomatidae. Nucleic Acids Res. 38 D457-62 PubMed
- ↑ Aurrecoechea, C et al. (2009) PlasmoDB: a functional genomic database for malaria parasites. Nucleic Acids Res. 37 D539-43 PubMed
- ↑ Aurrecoechea, C et al. (2009) GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. Nucleic Acids Res. 37 D526-30 PubMed
- ↑ Aurrecoechea, C et al. (2007) ApiDB: integrated resources for the apicomplexan bioinformatics resource center. Nucleic Acids Res. 35 D427-30 PubMed
- ↑ Wang, H et al. (2006) SynView: a GBrowse-compatible approach to visualizing comparative genome data. Bioinformatics 22 2308-9 PubMed
- ↑ Heiges, M et al. (2006) CryptoDB: a Cryptosporidium bioinformatics resource update. Nucleic Acids Res. 34 D419-22 PubMed
- ↑ Stoeckert, CJ Jr et al. (2006) PlasmoDB v5: new looks, new genomes. Trends Parasitol. 22 543-6 PubMed
- ↑ Fraunholz, MJ & Roos, DS (2003) PlasmoDB: exploring genomics and post-genomics data of the malaria parasite, Plasmodium falciparum. Redox Rep. 8 317-20 PubMed
- ↑ Bahl, A et al. (2003) PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Res. 31 212-5 PubMed
- ↑ Roos, DS et al. (2002) Mining the Plasmodium genome database to define organellar function: what does the apicoplast do? Philos. Trans. R. Soc. Lond., B, Biol. Sci. 357 35-46 PubMed
- ↑ Bahl, A et al. (2002) PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). Nucleic Acids Res. 30 87-90 PubMed
- ↑ Gajria, B et al. (2008) ToxoDB: an integrated Toxoplasma gondii database resource. Nucleic Acids Res. 36 D553-6 PubMed
- ↑ Kissinger, JC et al. (2003) ToxoDB: accessing the Toxoplasma gondii genome. Nucleic Acids Res. 31 234-6 PubMed
External Links
[link Eukaryotic Pathogen Database Resources (EuPathDB)] URL:link
