EMBOSS/sixpack

From EcoliWiki
Jump to: navigation, search

EMBOSS/sixpack takes a sequence and displays dsDNA along with translation in all 6 reading frames. Sixpack also generates a list of all ORFs found in the sequence as a FastA file.

To invoke sixpack on the command line without creating intermediate files use -filter, e.g.

% cat sequencefile.txt | sixpack -filter