OrthoMCL-DB
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Univ. of Pennsylvania |
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About OrthoMCL-DB
OrthoMCL-DB is an orthology database[1]. The OrthoMCL tool[2] is also used by other groups including P-POD.
Content
OrthoMCL DB houses ortholog group predictions for 55 species, including 16 bacterial and 4 archaeal genomes representing phylogenetically diverse lineages. OrthoMCL software is used to cluster proteins based on sequence similarity, using an all-against-all BLAST search of each species' proteome, followed by normalization of inter-species differences, and Markov clustering. OrthoMCL-DB provides a centralized warehouse for orthology prediction among multiple species.
Using OrthoMCL-DB
Browsing
Searching
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
External Links
OrthoMCL-DB URL:http://orthomcl.cbil.upenn.edu/cgi-bin/OrthoMclWeb.cgi
Discussion of OrthoMCL-DB on other websites
References
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