RegulonDB
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| RegulonDB | |
| Who: | Julio Collado-Vides |
| What: | RegulonDB provides information on operon organization and regulation in E. coli. |
| Where: | RegulonDB |
| Updates | Version 5.0 was released early 2006. |
| Upcoming events | link to event calendar, if applicable |
| Web Services | |
About RegulonDB
RegulonDB provides curated information on gene organization and regulation in E. coli. Current information is provided on the gene, operon and regulon level. Future expansion will include information on regulation beyond transcription initiation.
Content
The RegulonDB has a brief introduction as to what the goals of the database is. There is also a glossary that defines the terms that are used. Though there is a tutorial heading on the menu, there is really no tutorial--it's simply the glossary."
Using RegulonDB
Browsing
Searching
Usage examples
To search and test the database, I used OxyR. First, I searched at the gene level. The page was well-orgainized and included some of the following: Name, Synonyms, Position, Nucleotide Sequence and links to other databases.
Technology
Web Services/API
Discussion
Trackbacks
This feature is not yet functional
- $4$5: [$2 $1]
References
RegulonDB: a database on transcriptional regulation in Eschericia coli.
Huerta et al NAR 1998 vol 26. No. 1 pg 55-59.
RegulonDB (version4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12.
Salgado et al NAR 2004 Vol. 32 D303-D306.
RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions.
Salgado et al NAR 2006 Vol. 34 D394-3977.