GenExpDB
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| GenExpDB | |
| Who: | Tyrrell Conway, OU |
| What: | E. coli Gene Expression Database |
| Where: | GenExpDB |
| Updates | Incremental, as site is modified with data and applications |
| Upcoming events | link to event calendar, if applicable |
| Web Services | |
About GenExpDB
The University of Oklahoma Bioinformatics Core hosts the E. coli Gene Expression Database. EcoliGenExpDB was designed from the biologist’s perspective, with a tool box-style, integrated and interactive display interface and a simplified warehouse architecture, for analyzing a large and growing body of over 1200 multiplatform microarray experiments and 450 mouse intestinal colonization assays for the model organism Escherichia coli.
Content
Using GenExpDB
Browsing
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Usage examples
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Technology
Web Services/API
Discussion
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References
A DB-specific article has not yet been published.
Several papers published by the Conway laboratory reference data on EcoliGenExpDB, including:
Traxler, M. F., D.-E. Chang, and T. Conway. 2006. Guanosine 5’,3’-bispyrophosphate coordinates global gene expression during glucose-lactose diauxie in Escherichia coli. Proc. Nat. Acad. Sci. 103: 2374-2379.
Chang, D.E., D. Smalley, D. L. Tucker, M. P. Leatham, W. E. Norris, S. J. Stevenson, A. B. Anderson, J. E. Grissom, D. C. Laux, P. S. Cohen, and T. Conway. Carbon nutrition of Escherichia coli in the mouse intestine. 2004. Proc. Nat. Acad. Sci. 101: 7427–7432.
External Links
Discussion of GenExpDB on other websites
Metalink from EcoGene, using syntax http://chase.ou.edu/oubcf/ecoli/searchlink.php?bnum="b_number"