EchoBASE
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| EchoBASE | |
| Who: | Raju Misra, Richard Horler, and Gavin Thomas |
| What: | xx |
| Where: | EchoBASE (www.ecoli-york.org) |
| Updates | |
| Upcoming events | link to event calendar, if applicable |
| Web Services | |
About EchoBASE
EchoBASE curates experimental and bioinformatic information about E. coli genes and their gene products. The aim of this database is to provide information that will lead to functional predictions for gene products of unknown function. EchoBASE is part of the International E. coli Alliance.
Content
Using EchoBASE
As of July 11, 2006, there are 303 curated references in EchoBASE. The database contains descriptions of papers with information on the function of individual gene products, as well as the actual data from larger, post-genomic studies, which can be searched and manipulated. There are 106 curated experiments which can be browsed by type: Biochemistry (10), Bioinformatics (11), Genetics (13), Microarray (6), Protein-Protein Interaction (3), Proteomics (15), Structure (46), and Transcript Level (2).
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Usage examples
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Technology
Web Services/API
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References
Thomas, G.H. (1999) Completing the E. coli proteome: a database of gene products characterised since completion of the genome sequence. Bioinformatics 15:860-861.
Misra, R.V. et al. (2005) EchoBASE: an integrated post-genomic database for Escherichia coli. Nucleic Acids Res. 33(Database issue):D329-33