pgaB:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left |Standard Name
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''pgaB''  
''pgaB''  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left |Gene Synonym(s)
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''ycdR, ECK1013, b1023, JW5142, hmsF''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ycdR, ECK1013, b1023, JW5142, hmsF''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left {{table_heading_style}} |Product Desc.
!align=left |Product Desc.
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predicted enzyme associated with biofilm formation<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted enzyme associated with biofilm formation<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Biofilm adhesin polysaccharide PGA export; lipoprotein; polysaccharide deacetylase activity needed for export<ref name='LIB:EcoGene'/>
Biofilm adhesin polysaccharide PGA export; lipoprotein; polysaccharide deacetylase activity needed for export<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left |Product Synonyms(s)
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predicted enzyme associated with biofilm formation<ref name='LIB:Riley_2006'/>, B1023<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HmsF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PgaB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted enzyme associated with biofilm formation<ref name='LIB:Riley_2006'/>, B1023<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HmsF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PgaB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:pgaABCD|pgaABCD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:pgaABCD|pgaABCD]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left |Regulation/Activity
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Revision as of 02:38, 9 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

pgaB

Gene Synonym(s)

ycdR, ECK1013, b1023, JW5142, hmsF[1][2]

Product Desc.

predicted enzyme associated with biofilm formation[2][3]

Biofilm adhesin polysaccharide PGA export; lipoprotein; polysaccharide deacetylase activity needed for export[4]

Product Synonyms(s)

predicted enzyme associated with biofilm formation[1], B1023[2][1], YcdR[2][1], HmsF[2][1], PgaB[2][1]

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pgaABCD[2]

Regulation/Activity


edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


PGA is a biofilm adhesin polysaccharide. PgaB is homologous to Y. pestis hemin storage protein HmsF, but is unable to complement hmsF mutations. First 20 aa are a type II signal peptide. Codon usage indicates pgaB is an alien (horizontal) gene. CsrA regulon. yadE paralog. PGA is oly-beta-1,6-N-acetyl-D-glucosamine.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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