NCBI: Difference between revisions

Revision as of 00:55, 9 January 2010

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Link/URL:	http://www.ncbi.nlm.nih.gov/
What:	National Center for Biotechnology Information
Who:	National Library of Medicine, National Institutes of Health
Updates:
Upcoming events:
Web Services:	E-Utils
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About NCBI

NCBI is the National Center for Biotechnology Information at the National Libraries of Medicine at the NIH.

Content

We have separate EcoliWiki pages for several parts of NCBI, including

Using NCBI

Browsing

Searching

Searching across databases can be done using Entrez. Alternatively, use the pull-down menu to specify searching within a specific database. NCBI Entrez Protein: query by protein_id (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&cmd=Retrieve&list_uids=1788157&dopt=GenPept)
NCBI PubMed: query by gene name OR b# AND Escherichia coli (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Search&db=PubMed&term=%28edd+OR+b1851%29+AND+escherichia+coli&tool=fuzzy&ot=%28edd+OR+b1851%29+AND+%27Escherichia+coli%27%29)
NCBI Entrez Gene: query by gene_id (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=retrieve&dopt=graphics&list_uids=946362)
NCBI Entrez Genome: query by gene name (http://www.ncbi.nlm.nih.gov/genomes/altvik.cgi?gi=115&db=g&gene=edd)

Usage examples

Add links to additional pages describing success stories here.

Technology

Web Services/API

NCBI E-Utils web services can be used with Entrez databases

Entrez Database	Primary ID	E-Utility Database Name
3D Domains	3D SDI	domains
Domains	PSSM-ID	cdd
Genome	Genome ID	genome
Nucleotide	GI number	nucleotide
OMIM	MIM number	omim
PopSet	Popset ID	popset
Protein	GI number	protein
ProbeSet	GEO ID	geo
PubMed	PMID	pubmed
Structure	MMDB ID	structure
SNP	SNP ID	snp
Taxonomy	TAXID	taxonomy
UniGene	UniGene ID	unigene
UniSTS	UniSTS ID	unists
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Discussion

References

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See Help:References for how to manage references in EcoliWiki.

External Links

NCBI

Discussion of NCBI on other websites

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 http://www.ncbi.nlm.nih.gov/
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 National Center for Biotechnology Information
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 National Library of Medicine, National Institutes of Health
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