csrD:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left |Standard Name
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''csrD''  
''csrD''  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left |Gene Synonym(s)
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''yhdA, ECK3240, b3252, JW3221''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yhdA, ECK3240, b3252, JW3221''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left {{table_heading_style}} |Product Desc.
!align=left |Product Desc.
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regulator of CsrB and CsrC decay<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
regulator of CsrB and CsrC decay<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Targets csrB/C sRNAs for degradation by RNase E; carbon flux regulator; mechanism unknown; indirectly affects CsrA function<ref name='LIB:EcoGene'/>
Targets csrB/C sRNAs for degradation by RNase E; carbon flux regulator; mechanism unknown; indirectly affects CsrA function<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left |Product Synonyms(s)
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conserved inner membrane protein<ref name='LIB:Riley_2006'/>, B3252<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsrD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
conserved inner membrane protein<ref name='LIB:Riley_2006'/>, B3252<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsrD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yhdA|yhdA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yhdA|yhdA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left |Regulation/Activity
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Revision as of 00:28, 9 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

csrD

Gene Synonym(s)

yhdA, ECK3240, b3252, JW3221[1][2]

Product Desc.

regulator of CsrB and CsrC decay[2][3]

Targets csrB/C sRNAs for degradation by RNase E; carbon flux regulator; mechanism unknown; indirectly affects CsrA function[4]

Product Synonyms(s)

conserved inner membrane protein[1], B3252[2][1], YhdA[2][1], CsrD[2][1]

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yhdA[2]

Regulation/Activity


edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


CsrD has a central GGDEF putative diguanylate cyclase, then a C-terminal putative cyclic-di-GMP phosphodiesterase EAL domain. CsrD's role in csrB/C destabilization does not involve cyclic-di-GMP metabolism; very low level of CsrD expression; CsrD may work at substoichiometric concentrations (Suzuki, 2006). False positive lipoprotein prediction, Cys not conserved.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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