AlignACE: Difference between revisions
Fixing references section. |
Update TableEdit tables. |
||
| Line 12: | Line 12: | ||
* | * | ||
****************************************************************************************** --> | ****************************************************************************************** --> | ||
{| | {| id="N46afcc24a73c4" class=" tableEdit Database_table" | ||
|- | |- | ||
!align=left | !align=left |Link/URL: | ||
|| | || | ||
[http://arep.med.harvard.edu/ecoli_matrices AlignACE] | [http://arep.med.harvard.edu/ecoli_matrices AlignACE] | ||
|- | |- | ||
!align=left | !align=left |What: | ||
|| | || | ||
Matrices which search for additional binding sites in the E. coli genomic sequence. | Matrices which search for additional binding sites in the E. coli genomic sequence. | ||
|- | |- | ||
!align=left | !align=left |Who: | ||
|| | || | ||
Abigail Manson McGuire | Abigail Manson McGuire | ||
| Line 31: | Line 31: | ||
Harvard Medical School | Harvard Medical School | ||
|- | |- | ||
!align=left | !align=left |Updates: | ||
|| | || | ||
<i>Last Updated: Nov. 1998</i> | <i>Last Updated: Nov. 1998</i> | ||
|- | |- | ||
!align=left | !align=left |Upcoming events: | ||
|| | || | ||
|- | |- | ||
!align=left | !align=left |Web Services: | ||
|| | || | ||
|-class= | |- class="tableEdit_footer" | ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.1636.N46afcc24a73c4&page=1636&pagename={{FULLPAGENAMEE}}&type=1&template=Database_table edit table] || | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.1636.N46afcc24a73c4&page=1636&pagename={{FULLPAGENAMEE}}&type=1&template=Database_table edit table]</span> || | ||
|} | |} | ||
<!--box uid=63ce1649aab8b3180235b0af7618f667.1636.N46afcc24a73c4--></protect> | <!--box uid=63ce1649aab8b3180235b0af7618f667.1636.N46afcc24a73c4--></protect> | ||
Revision as of 23:57, 8 January 2010
You can help EcoliWiki by editing the content of this page. For information about becoming a registered user and obtaining editing privileges, see Help:Accounts.
| Link/URL: | |
|---|---|
| What: |
Matrices which search for additional binding sites in the E. coli genomic sequence. |
| Who: |
Abigail Manson McGuire Genetics Dept. Harvard Medical School |
| Updates: |
Last Updated: Nov. 1998 |
| Upcoming events: | |
| Web Services: |
|
| edit table |
See Help:Database_table for how to add or edit information in this section of EcoliWiki.
About AlignACE
The AlignACE website has a collection of predicted transcription factor binding sites based on running scanACE, an algorithm published[1] by the Church lab against the MG1655 genome.
Content
AlignACE has a table with links from the 59 DNA-binding proteins for which they have predicted binding sites by extrapolation from footprinting data. There are also summary tables and the code for scanACE and alignACE can be downloaded via a link to a Church lab website. These programs implement the approach of Berg and von Hippel [2][3]
Using AlignACE
Browsing
Searching
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Robison, K et al. (1998) A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome. J. Mol. Biol. 284 241-54 PubMed
- ↑ Berg, OG & von Hippel, PH (1988) Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites. J Mol Biol 200 709-23 PubMed
- ↑ Berg, OG & von Hippel, PH (1987) Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. J. Mol. Biol. 193 723-50 PubMed