thiM:Quickview: Difference between revisions
imported>Wikientrybot No edit summary |
imported>Wikientrybot No edit summary |
||
| Line 28: | Line 28: | ||
|- | |- | ||
!align=left {{table_heading_style}} |Standard Name | !align=left {{table_heading_style}} |Standard Name | ||
|| | |||
''thiM'' | |||
|- | |- | ||
!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | |||
''ECK2097, b2104, JW2091''<ref name='LIB:Riley_2006'/> | |||
|- | |- | ||
!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
|| | |||
hydroxyethylthiazole kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | |||
Hydroxyethylthiazole kinase<ref name='LIB:EcoGene'/> | |||
|- | |- | ||
!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | |||
hydoxyethylthiazole kinase<ref name='LIB:Riley_2006'/>, B2104<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThiM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, 4-methyl-5-(β-hydroxyethyl)thiazole kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ATP:4-methyl-5-(2-hydroxyethyl)-thiazole 2-phosphotransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, THZ kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | |||
|- | |- | ||
!align=left {{table_heading_style}} |Knock-Out Phenotype | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
|| | |||
|- | |- | ||
!align=left {{table_heading_style}} |Regulation/Expression | !align=left {{table_heading_style}} |Regulation/Expression | ||
|| | |||
transcription unit(s): [[:Category:Txn_unit:thiD|thiD]]<ref name='LIB:EcoCyc10.6'/> | |||
|- | |- | ||
!align=left {{table_heading_style}} |Regulation/Activity | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | |||
|-class='sortbottom' | |-class='sortbottom' | ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.5955.C49b0268c8b9d5&page=5955&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table] | |[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.5955.C49b0268c8b9d5&page=5955&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table] || | ||
|} | |} | ||
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.5955.C49b0268c8b9d5--></protect> | <!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.5955.C49b0268c8b9d5--></protect> | ||
Revision as of 19:22, 5 March 2009
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
thiM |
|---|---|
| Gene Synonym(s) |
ECK2097, b2104, JW2091[1] |
| Product Desc. |
hydroxyethylthiazole kinase[2][3] Hydroxyethylthiazole kinase[4] |
| Product Synonyms(s) |
hydoxyethylthiazole kinase[1], B2104[2][1], ThiM[2][1], 4-methyl-5-(β-hydroxyethyl)thiazole kinase[2][1], ATP:4-methyl-5-(2-hydroxyethyl)-thiazole 2-phosphotransferase[2][1], THZ kinase[2][1] |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
thiMD operon expression is controlled by a thiamine pyrophosphate (TPP) responsive riboswitch in the 5' UTR. The thiM riboswitch is the target for the antibiotic pyrithiamine. The PDB links are to the structures of various thiM riboswitch/small molecule complexes: 2GDI, TPP; 2HOJ, TPP/Mn2+; 2HOK, TPP/Ca2+; 2HOL, TPP/Ba2+; 2HOM,TMP; 2HOO, BTP; 2HOP, PT (Serganov, 2006; Edwards, 2006).[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.