rpiA:Expression: Difference between revisions

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===Notes===
===Notes===
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!Allele Name!!Mutation!!Phenotype!!Reference
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<big>'''Expression Studies'''</big>
<big>'''Expression Studies'''</big>
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microarray  
microarray
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[http://genexpdb.ou.edu/index.php?query=b2914 GenExpDB:b2914] ([[EcoliGenExpDB|EcoliWiki Page]])  
[[geoprofiles:b2914|GEO Profiles:b2914]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
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Summary of data for rpiA from multiple microarray studies 
NCBI GEO profiles for ''rpiA''
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microarray
microarray  
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[[geoprofiles:b2914|GEO Profiles:b2914]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
[http://genexpdb.ou.edu/index.php?query=b2914 GenExpDB:b2914] ([[EcoliGenExpDB|EcoliWiki Page]])  
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NCBI GEO profiles for ''rpiA''
Summary of data for rpiA from multiple microarray studies 


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<big>'''Expression Resources'''</big>
<big>'''Expression Resources'''</big>
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plasmid
GFP Fusion
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rpiA promoter fragment cloned into pKO500, which is a galK expression vector
Intergenic region (3057251..3057418) fused to <i>gfpmut2</i>.
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<ref name='PMID:8366047'/>
[http://www.openbiosystems.com/GeneExpression/Non-Mammalian/Bacteria/EcoliPromoters/ OpenBioSystems][[Category:Genes in OpenBioSystems with Promoter Fusions]]
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GFP fusion described in Zaslaver, <i>et al.</i><br />Plate:109-AZ01; Well:H3<ref name="PMID:16862137" />
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GFP Fusion
plasmid
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Intergenic region (3057251..3057418) fused to <i>gfpmut2</i>.
rpiA promoter fragment cloned into pKO500, which is a galK expression vector
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[http://www.openbiosystems.com/GeneExpression/Non-Mammalian/Bacteria/EcoliPromoters/ OpenBioSystems][[Category:Genes in OpenBioSystems with Promoter Fusions]]
<ref name='PMID:8366047'/>
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GFP fusion described in Zaslaver, <i>et al.</i><br />Plate:109-AZ01; Well:H3<ref name="PMID:16862137" />


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<protect><!--Expression_experimental_notes--></protect>
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===Notes===
===Notes===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11443 EcoCyc:EG11443]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11443 EcoCyc:EG11443]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB1413 EchoBASE:EB1413]
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB1413 EchoBASE:EB1413]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
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[http://genexpdb.ou.edu/index.php?query=b2914 GenExpDB:b2914]
[http://chase.ou.edu/macro/searchlink.php?bnum=b2914 EcoliGenExpDB:b2914]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
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[http://ecogene.org/geneinfo.php?eg_id=EG11443 EcoGene:EG11443]
[http://ecogene.org/geneinfo.php?eg_id=EG11443 EcoGene:EG11443]
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===Notes===
===Notes===
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==References==
==References==
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<references/>
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__NOTOC__
__NOTOC__

Revision as of 07:33, 6 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rpiA

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Figure courtesy of RegulonDB


Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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gbrowse_img.php?coord=3057327..3057367&genome=ecoli&name=MG1655&trackset=Genes_unlabeled+DNA_unlabeled+flip&width=400&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2914 (EcoliWiki Page)

NCBI GEO profiles for rpiA

microarray

GenExpDB:b2914 (EcoliWiki Page)

Summary of data for rpiA from multiple microarray studies

edit table


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (3057251..3057418) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ01; Well:H3[1]

plasmid

rpiA promoter fragment cloned into pKO500, which is a galK expression vector

[2]


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<protect>

Notes

Accessions Related to rpiA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11443

EchoBASE (EcoliWiki Page)

EchoBASE:EB1413

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2914

EcoGene (EcoliWiki Page)

EcoGene:EG11443


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Notes

Links

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Name URL Comments
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References

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  1. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed
  2. ↑ Hove-Jensen, B & Maigaard, M (1993) Escherichia coli rpiA gene encoding ribose phosphate isomerase A. J. Bacteriol. 175 5628-35 PubMed


Categories

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