bamD:Quickview: Difference between revisions

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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Gene Name
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[[yfiO:Gene|''yfiO]]'' (synonyms: '' ECK2593, b2595, JW2577, ecfD, bamD'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoGene'/>
[[yfiO:Gene|''yfiO]]'' (synonyms: '' ECK2593, b2595, JW2577, ecfD, bamD'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoGene'/>
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Product(s)  
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[[yfiO:Gene_Product(s)|YfiO product]]<ref name='LIB:Riley_2006'/>: predicted lipoprotein product, B2595 product, EcfD product; BamD product<ref name='LIB:EcoGene'/>
[[yfiO:Gene_Product(s)|YfiO product]]<ref name='LIB:Riley_2006'/>: predicted lipoprotein product, B2595 product, EcfD product; BamD product<ref name='LIB:EcoGene'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Description
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YfiO<ref name='LIB:EcoCyc10.6'/> YfiO-lipoprotein component of outer membrane protein assembly complex<ref name='LIB:EcoCyc11.1'/>  
YfiO<ref name='LIB:EcoCyc10.6'/> YfiO-lipoprotein component of outer membrane protein assembly complex<ref name='LIB:EcoCyc11.1'/>  


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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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essential gene <ref name=PMID:16824102/>,<ref name=PMID:15968066/>
essential gene <ref name=PMID:16824102/>,<ref name=PMID:15968066/>
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yfiO|yfiO]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yfiO|yfiO]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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==References==
==References==
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Revision as of 22:12, 21 January 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Gene Name

yfiO (synonyms: ECK2593, b2595, JW2577, ecfD, bamD)[1][2]

Product(s)

YfiO product[1]: predicted lipoprotein product, B2595 product, EcfD product; BamD product[2]

Description

YfiO[3] YfiO-lipoprotein component of outer membrane protein assembly complex[4]

Component of Outer Membrane Protein Assembly Complex[4]

Knock-Out Phenotype

essential gene [5],[6]

Regulation/Expression

transcription unit(s): yfiO[3]

Regulation/Activity


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See Help:Quickview for help with entering information in the Quickview table.

Notes

A consensus has been reached for renaming the genes that encode components of the outer membrane β-barrel assembly machine, (formerly known as the YaeT complex of E. coli or the Omp85 complex of N. meningitidis). The new designation for this multi-component structure is the Bam complex (for beta-barrel assembly machine).

The Bam complex in E. coli consists of BamA (YaeT), BamB (YfgL), BamC (NlpB), BamD (YfiO), and BamE (SmpA). Letters have been assigned on the basis of molecular weight, from highest to lowest [2].

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References

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  1. ↑ 1.0 1.1 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ Malinverni, JC et al. (2006) YfiO stabilizes the YaeT complex and is essential for outer membrane protein assembly in Escherichia coli. Mol. Microbiol. 61 151-64 PubMed
  6. ↑ Onufryk, C et al. (2005) Characterization of six lipoproteins in the sigmaE regulon. J. Bacteriol. 187 4552-61 PubMed
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