bcr:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Edited by wikibot
imported>Wikientrybot
Move help links into the <above> tag inside templates.
Line 25: Line 25:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' {{Prettytable}} id='210636'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Bos taurus''   
''Bos taurus''   
Line 40: Line 40:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
Line 61: Line 61:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Canis familiaris''   
''Canis familiaris''   
Line 69: Line 69:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Ciona intestinalis''   
''Ciona intestinalis''   
Line 78: Line 78:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Homo sapiens''   
''Homo sapiens''   
Line 86: Line 86:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Monodelphis domestica''   
''Monodelphis domestica''   
Line 94: Line 94:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
Line 107: Line 107:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
Line 120: Line 120:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Takifugu rubripes''   
''Takifugu rubripes''   
Line 130: Line 130:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
Line 141: Line 141:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Xenopus tropicalis''   
''Xenopus tropicalis''   
Line 148: Line 148:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 155: Line 155:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-
|-  
|
|
''E. coli'' O157  
''E. coli'' O157  
Line 162: Line 162:
|
|
From ECOO157CYC  
From ECOO157CYC  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48337.M46abd426172eb&page=48337&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48337.M46abd426172eb&page=48337&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.48337.M46abd426172eb-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.48337.M46abd426172eb-->
{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
Line 183: Line 184:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' {{Prettytable}} id='210637'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF07690 PFAM:PF07690]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF07690 PFAM:PF07690]
|
|
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48337.E46abd4359de08&page=48337&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48337.E46abd4359de08&page=48337&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.48337.E46abd4359de08-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.48337.E46abd4359de08-->
{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
Line 211: Line 213:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='112266'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!|Name!!URL!!Comments
 
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48337.N46a81a6244398&page=48337&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48337.N46a81a6244398&page=48337&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.48337.N46a81a6244398-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.48337.N46a81a6244398-->
{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
<noinclude>
<noinclude>

Revision as of 21:52, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000019955 (score: 1.000; bootstrap: 100%)
  • YP_025306 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00017861 (score: 1.000; bootstrap: 100%)
  • WBGene00010182 (score: 0.275)
  • WBGene00021814 (score: 0.256)
  • WBGene00010282 (score: 0.240)
  • WBGene00020888 (score: 0.191)
  • WBGene00013996 (score: 0.186)
  • WBGene00012280 (score: 0.181)
  • WBGene00020889 (score: 0.180)
  • WBGene00016095 (score: 0.158)
  • WBGene00016093 (score: 0.154)
  • WBGene00016094 (score: 0.143)
  • WBGene00018706 (score: 0.138)
  • WBGene00012170 (score: 0.137)
  • WBGene00008793 (score: 0.103)
  • WBGene00012222 (score: 0.098)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000009900 (score: 1.000; bootstrap: 100%)
  • YP_025306 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000001580 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000010495 (score: 0.456)
  • YP_025306 (score: 1.000; bootstrap: 54%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000342819 (score: 1.000; bootstrap: 100%)
  • YP_025306 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003060 (score: 1.000; bootstrap: 100%)
  • YP_025306 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YP_025306 (score: 1.000; bootstrap: 100%)
  • YBR008C (score: 1.000; bootstrap: 100%)
  • YPR156C (score: 1.000; bootstrap: 100%)
  • YGR138C (score: 0.882)
  • YLL028W (score: 0.165)
  • YOR273C (score: 0.155)
  • YHR048W (score: 0.151)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • YP_025306 (score: 1.000; bootstrap: 100%)
  • SPBC4098 (score: 1.000; bootstrap: 100%)
  • SPBC361c (score: 1.000; bootstrap: 100%)
  • SPCC15291 (score: 1.000; bootstrap: 100%)
  • SPCC5695c (score: 0.580)
  • SPBC362c (score: 0.573)
  • SPAC11D35 (score: 0.241)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000182614 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000182022 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000172063 (score: 0.199)
  • YP_025306 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00003491001 (score: 1.000; bootstrap: 100%)
  • GSTENP00010764001 (score: 0.425)
  • GSTENP00035906001 (score: 0.298)
  • GSTENP00016459001 (score: 0.295)
  • YP_025306 (score: 0.092)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000038760 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

BCR

From SHIGELLACYC

E. coli O157

BCR

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF07690


edit table


Notes

Links

[back to top]


Name URL Comments
edit table


References

[back to top]




Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=bcr:Evolution&oldid=652583"