PHOSIDA: Difference between revisions

Revision as of 20:04, 17 March 2008

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Link/URL:	http://www.phosida.de/
What:	Phosida - Phosphorylation Site Database
Who:	Florian Gnad and Matthias Mann
Updates:	Genome Annotation Section
Upcoming events:	Inclusion of additional phosphoproteomes of various organisms
Web Services:
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About PHOSIDA

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PHOSIDA, the phosphorylation site database, integrates thousands of high-confidence in-vivo phosphosites identified by mass spectrometry-based proteomics in various species. It includes phosphoproteomes of organisms, which cover the entire phylogenetic tree representatively, ranging from bacteria such as Escherichia coli and Bacillus subtilis to eukaryotes such as yeast and human. It contains 81 phosphorylation sites on 79 E.coli proteins, for example.
E.coli results are described in Macek and Gnad et al.^[1].

Content

PHOSIDA contains phosphoproteomes of the following prokaryotes:


Escherichia coli (79 phosphoproteins, 81 phosphosites)
Bacillus subtilis (78 phosphoproteins, 78 phosphosites)
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Using PHOSIDA

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Usage examples

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Technology

Web Services/API

Discussion

References

↑ Macek, B et al. (2008) Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation. Mol. Cell Proteomics 7 299-307 PubMed

External Links

PHOSIDA (Phosphorylation Site Database): http://www.phosida.com
MAPU (Max-Planck Unified Proteome Database): http://www.mapuproteome.com

Discussion of PHOSIDA on other websites

[PMID:_17938405-1] Macek, B et al. (2008) Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation. Mol. Cell Proteomics 7 299-307 PubMed

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