curA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415966&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415966&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:03, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020750 (score: 1.000; bootstrap: 99%)
  • ENSANGP00000012490 (score: 0.372)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000006907 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G16990 (score: 1.000; bootstrap: 99%)
  • AT5G16970 (score: 0.874)
  • AT5G17000 (score: 0.872)
  • AT3G03080 (score: 0.729)
  • AT1G26320 (score: 0.712)
  • AT5G37940 (score: 0.667)
  • AT5G37980 (score: 0.665)
  • AT5G16960 (score: 0.660)
  • AT5G38000 (score: 0.643)
  • AT3G59845 (score: 0.498)
  • AT5G16980 (score: 0.432)
  • AT1G65560 (score: 0.348)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000014649 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025949 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010911 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000004469 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000004207 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041212-80 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041212-89 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231606 (score: 1.000; bootstrap: 100%)
  • DDB0186921 (score: 0.350)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000031994 (score: 1.000; bootstrap: 49%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000311572 (score: 1.000; bootstrap: 53%)
  • ENSP00000339034 (score: 0.605)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016746 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000015080 (score: 0.544)
  • ENSMMUP00000025928 (score: 0.405)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000005764 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Mus musculus

  • MGI:1914353 (score: 1.000; bootstrap: 60%)

From Inparanoid:20070104

Oryza gramene

  • Q53LC7 (score: 1.000; bootstrap: 99%)
  • Q7XUK3 (score: 0.422)
  • Q8S0M7 (score: 0.344)
  • Q69XJ5 (score: 0.128)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000011071 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000020335 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YML131W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAPB24D38c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000128105 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025902001 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000032291 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Shigella flexneri

YNCB

From SHIGELLACYC

E. coli O157

YNCB

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00107

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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References

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Categories

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