ymdB:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415563&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415563&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:03, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000026805 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000003250 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G40600 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000022152 (score: 1.000; bootstrap: 63%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028406 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007106 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000021700 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1490 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040425-2424 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040912-102 (score: 0.119)
  • ZDB-GENE-040912-100 (score: 0.119)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0204524 (score: 1.000; bootstrap: 99%)
  • DDB0202152 (score: 0.076)
  • DDB0217701 (score: 0.065)
  • DDB0218164 (score: 0.057)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0042135 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15091-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000019695 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000255681 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000000654 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000022828 (score: 1.000; bootstrap: 82%)
  • ENSMODP00000022840 (score: 0.531)
  • ENSMODP00000022835 (score: 0.054)

From Inparanoid:20070104

Mus musculus

  • MGI:1920149 (score: 1.000; bootstrap: 99%)
  • MGI:2147583 (score: 0.134)

From Inparanoid:20070104

Oryza gramene

  • Q7XDZ9 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000006563 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000028749 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000174827 (score: 1.000; bootstrap: 50%)
  • NEWSINFRUP00000163314 (score: 0.127)
  • NEWSINFRUP00000127717 (score: 0.072)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00016897001 (score: 1.000; bootstrap: 62%)
  • GSTENP00034907001 (score: 0.149)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000050550 (score: 1.000; bootstrap: 65%)
  • ENSXETP00000050557 (score: 0.078)

From Inparanoid:20070104

Shigella flexneri

S1115

From SHIGELLACYC

E. coli O157

Z1679

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF01661

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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References

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Categories

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