yhhA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417905&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417905&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:02, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Dictyostelium discoideum

  • DDB0201766 (score: 1.000; bootstrap: 61%)
  • DDB0220099 (score: 1.000; bootstrap: 60%)
  • DDB0217030 (score: 0.161)
  • DDB0190583 (score: 0.158)
  • DDB0188057 (score: 0.153)
  • DDB0214889 (score: 0.133)
  • DDB0168830 (score: 0.120)
  • DDB0205116 (score: 0.120)
  • DDB0188232 (score: 0.096)
  • DDB0202909 (score: 0.095)
  • DDB0189922 (score: 0.089)
  • DDB0206250 (score: 0.084)
  • DDB0206274 (score: 0.084)
  • DDB0219861 (score: 0.082)
  • DDB0219388 (score: 0.081)
  • DDB0169494 (score: 0.081)
  • DDB0189354 (score: 0.079)
  • DDB0191425 (score: 0.077)
  • DDB0168717 (score: 0.077)
  • DDB0220500 (score: 0.075)
  • DDB0216874 (score: 0.074)
  • DDB0231041 (score: 0.072)
  • DDB0215321 (score: 0.072)
  • DDB0217696 (score: 0.070)
  • DDB0184128 (score: 0.067)
  • DDB0189556 (score: 0.067)
  • DDB0202277 (score: 0.065)
  • DDB0206028 (score: 0.065)
  • DDB0232946 (score: 0.065)
  • DDB0217664 (score: 0.065)
  • DDB0190016 (score: 0.064)
  • DDB0220664 (score: 0.062)
  • DDB0185187 (score: 0.062)
  • DDB0215009 (score: 0.061)
  • DDB0187452 (score: 0.060)
  • DDB0191424 (score: 0.060)
  • DDB0206452 (score: 0.059)
  • DDB0204963 (score: 0.059)
  • DDB0185770 (score: 0.058)
  • DDB0220000 (score: 0.058)
  • DDB0188781 (score: 0.056)
  • DDB0202068 (score: 0.056)
  • DDB0205813 (score: 0.056)
  • DDB0216408 (score: 0.056)
  • DDB0189717 (score: 0.056)
  • DDB0233012 (score: 0.055)
  • DDB0191524 (score: 0.055)
  • DDB0187373 (score: 0.055)
  • DDB0231499 (score: 0.054)
  • DDB0185432 (score: 0.053)
  • DDB0219302 (score: 0.052)

From Inparanoid:20070104

Shigella flexneri

YHHA

From SHIGELLACYC

E. coli O157

YHHA

From ECOO157CYC

edit table

See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Do-It-Yourself Web Tools


Notes

Families

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Organism Homologs (Statistics) Comments

Dictyostelium discoideum

  • DDB0201766 (score: 1.000; bootstrap: 61%)
  • DDB0220099 (score: 1.000; bootstrap: 60%)
  • DDB0217030 (score: 0.161)
  • DDB0190583 (score: 0.158)
  • DDB0188057 (score: 0.153)
  • DDB0214889 (score: 0.133)
  • DDB0168830 (score: 0.120)
  • DDB0205116 (score: 0.120)
  • DDB0188232 (score: 0.096)
  • DDB0202909 (score: 0.095)
  • DDB0189922 (score: 0.089)
  • DDB0206250 (score: 0.084)
  • DDB0206274 (score: 0.084)
  • DDB0219861 (score: 0.082)
  • DDB0219388 (score: 0.081)
  • DDB0169494 (score: 0.081)
  • DDB0189354 (score: 0.079)
  • DDB0191425 (score: 0.077)
  • DDB0168717 (score: 0.077)
  • DDB0220500 (score: 0.075)
  • DDB0216874 (score: 0.074)
  • DDB0231041 (score: 0.072)
  • DDB0215321 (score: 0.072)
  • DDB0217696 (score: 0.070)
  • DDB0184128 (score: 0.067)
  • DDB0189556 (score: 0.067)
  • DDB0202277 (score: 0.065)
  • DDB0206028 (score: 0.065)
  • DDB0232946 (score: 0.065)
  • DDB0217664 (score: 0.065)
  • DDB0190016 (score: 0.064)
  • DDB0220664 (score: 0.062)
  • DDB0185187 (score: 0.062)
  • DDB0215009 (score: 0.061)
  • DDB0187452 (score: 0.060)
  • DDB0191424 (score: 0.060)
  • DDB0206452 (score: 0.059)
  • DDB0204963 (score: 0.059)
  • DDB0185770 (score: 0.058)
  • DDB0220000 (score: 0.058)
  • DDB0188781 (score: 0.056)
  • DDB0202068 (score: 0.056)
  • DDB0205813 (score: 0.056)
  • DDB0216408 (score: 0.056)
  • DDB0189717 (score: 0.056)
  • DDB0233012 (score: 0.055)
  • DDB0191524 (score: 0.055)
  • DDB0187373 (score: 0.055)
  • DDB0231499 (score: 0.054)
  • DDB0185432 (score: 0.053)
  • DDB0219302 (score: 0.052)

From Inparanoid:20070104

Shigella flexneri

YHHA

From SHIGELLACYC

E. coli O157

YHHA

From ECOO157CYC

edit table

See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

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Categories

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