treC:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418660&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418660&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:58, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000029063 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000014374 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000008418 (score: 0.306)
  • ENSAPMP00000024487 (score: 0.161)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000023161 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00032258 (score: 1.000; bootstrap: 100%)
  • WBGene00023839 (score: 0.120)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000225 (score: 1.000; bootstrap: 100%)
  • WBGene00000224 (score: 0.145)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000003699 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-000831-3 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-853 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1734 (score: 0.392)
  • ZDB-CDNA-040425-1733 (score: 0.382)
  • ZDB-GENE-040122-2 (score: 0.382)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0204945 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0032382 (score: 1.000; bootstrap: 100%)
  • FBgn0032381 (score: 0.500)
  • FBgn0050359 (score: 0.288)
  • FBgn0002570 (score: 0.281)
  • FBgn0033296 (score: 0.281)
  • FBgn0033294 (score: 0.274)
  • FBgn0002571 (score: 0.270)
  • FBgn0033297 (score: 0.266)
  • FBgn0050360 (score: 0.262)
  • FBgn0002569 (score: 0.182)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13361-PA (score: 1.000; bootstrap: 100%)
  • GA13362-PA (score: 0.498)
  • GA21261-PA (score: 0.273)
  • GA15787-PA (score: 0.267)
  • GA21264-PA (score: 0.263)
  • GA21263-PA (score: 0.199)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000016193 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000260649 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000008308 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000000845 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1195264 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000020401 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000009581 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGR287C (score: 1.000; bootstrap: 100%)
  • YOL157C (score: 0.932)
  • YJL221C (score: 0.929)
  • YIL172C (score: 0.929)
  • YBR299W (score: 0.646)
  • YGR292W (score: 0.645)
  • YJL216C (score: 0.539)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC16837 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000156856 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000005991 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

TREC

From SHIGELLACYC

E. coli O157

TREC

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00128

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Notes

Links

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Name URL Comments
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References

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Categories

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