rimK:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415373&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415373&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:57, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000023262 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000004262 (score: 0.611)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000020456 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000003727 (score: 0.633)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040912-20 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040912-22 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000023045 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000350136 (score: 1.000; bootstrap: 100%)
  • ENSP00000343675 (score: 0.649)
  • ENSP00000324766 (score: 0.553)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000029852 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000017241 (score: 0.428)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000022444 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000021607 (score: 0.665)

From Inparanoid:20070104

Mus musculus

  • MGI:1918325 (score: 1.000; bootstrap: 100%)
  • MGI:3040686 (score: 0.493)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000007924 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000001047 (score: 0.641)
  • ENSPTRP00000023897 (score: 0.598)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000028923 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000011586 (score: 0.524)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140490 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00013753001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000020712 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000029485 (score: 0.555)

From Inparanoid:20070104

Shigella flexneri

RIMK

From SHIGELLACYC

E. coli O157

RIMK

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF02222

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Notes

Links

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Name URL Comments
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References

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Categories

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