nhoA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415980&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415980&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:55, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000021898 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002104 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000002232 (score: 0.580)
  • ENSCINP00000006205 (score: 0.574)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040724-256 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040724-62 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040724-93 (score: 0.869)
  • ZDB-CDNA-040801-115 (score: 0.084)
  • ZDB-GENE-040801-107 (score: 0.084)
  • ZDB-CDNA-041010-49 (score: 0.060)
  • ZDB-GENE-041010-49 (score: 0.060)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000008777 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000008779 (score: 0.709)
  • ENSGALP00000008780 (score: 0.600)
  • ENSGALP00000008778 (score: 0.541)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000307218 (score: 1.000; bootstrap: 100%)
  • ENSP00000286479 (score: 0.793)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000028547 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000007787 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:109201 (score: 1.000; bootstrap: 100%)
  • MGI:97279 (score: 0.820)
  • MGI:102537 (score: 0.707)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000034296 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000034297 (score: 0.805)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000051430 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000048448 (score: 0.705)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000165208 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015524001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

E. coli O157

Z2250

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00797

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Notes

Links

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Name URL Comments
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References

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Categories

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