gcvT:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417381&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417381&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:52, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012075 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000022475 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G11860 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000002992 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00030937 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00017765 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000016880 (score: 1.000; bootstrap: 91%)
  • ENSCAFP00000009876 (score: 0.416)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000004210 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000012157 (score: 0.431)
  • ENSCINP00000015639 (score: 0.422)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041010-114 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-041010-114 (score: 1.000; bootstrap: 99%)
  • ZDB-GENE-050522-138 (score: 0.081)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231218 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0032287 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19575-PA (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007139 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000004490 (score: 0.195)
  • ENSGALP00000004232 (score: 0.153)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000273588 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000007210 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000017532 (score: 0.244)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000016231 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Mus musculus

  • MGI:3646700 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000025761 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000030481 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR019C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC31G54 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000177134 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00008972001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000012982 (score: 1.000; bootstrap: 95%)
  • ENSXETP00000013066 (score: 0.162)

From Inparanoid:20070104

Shigella flexneri

GCVT

From SHIGELLACYC

E. coli O157

GCVT

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF01571

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.



Categories

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