ftnA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416418&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416418&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:52, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000000163 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000019996 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G40300 (score: 1.000; bootstrap: 100%)
  • AT3G56090 (score: 0.733)
  • AT3G11050 (score: 0.602)
  • AT5G01600 (score: 0.573)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00024156 (score: 1.000; bootstrap: 100%)
  • WBGene00033041 (score: 0.769)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000002273 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000026412 (score: 0.452)
  • ENSMODP00000005165 (score: 0.388)
  • ENSMODP00000009409 (score: 0.388)
  • ENSMODP00000002263 (score: 0.369)
  • ENSMODP00000017165 (score: 0.252)
  • ENSMODP00000007163 (score: 0.246)
  • ENSMODP00000025098 (score: 0.166)
  • ENSMODP00000023431 (score: 0.163)

From Inparanoid:20070104

Oryza gramene

  • P29390 (score: 1.000; bootstrap: 100%)
  • P29036 (score: 0.852)
  • Q5G1L6 (score: 0.744)
  • Q8LK80 (score: 0.733)
  • Q6DQK1 (score: 0.733)
  • Q8L5K0 (score: 0.733)
  • Q94KA2 (score: 0.721)
  • Q6VVA5 (score: 0.441)
  • Q945F6 (score: 0.441)
  • Q4FCZ8 (score: 0.429)

From Inparanoid:20070104

Shigella flexneri

FTN

From SHIGELLACYC

E. coli O157

FTN

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00210

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Notes

Links

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Name URL Comments
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References

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