cueO:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_414665&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_414665&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:50, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000000035 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000008010 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000006188 (score: 0.259)
  • ENSAPMP00000021510 (score: 0.225)
  • ENSAPMP00000008011 (score: 0.179)
  • ENSAPMP00000028827 (score: 0.138)
  • ENSAPMP00000016897 (score: 0.108)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G71040 (score: 1.000; bootstrap: 70%)
  • AT1G23010 (score: 0.781)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002481 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000018618 (score: 0.249)
  • ENSCINP00000018617 (score: 0.186)
  • ENSCINP00000006845 (score: 0.169)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0039387 (score: 1.000; bootstrap: 100%)
  • FBgn0052557 (score: 0.274)
  • FBgn0032116 (score: 0.175)
  • FBgn0050437 (score: 0.091)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19259-PA (score: 1.000; bootstrap: 100%)
  • GA16988-PA (score: 0.258)
  • GA17667-PA (score: 0.192)
  • GA15844-PA (score: 0.141)

From Inparanoid:20070104

Mus musculus

  • MGI:1332240 (score: 1.000; bootstrap: 100%)
  • MGI:88476 (score: 0.423)
  • MGI:2685355 (score: 0.399)
  • MGI:88383 (score: 0.267)
  • MGI:88382 (score: 0.246)

From Inparanoid:20070104

Oryza gramene

  • Q7F757 (score: 1.000; bootstrap: 64%)
  • Q5ZE01 (score: 0.972)
  • Q9AWU4 (score: 0.624)
  • Q5ZDZ9 (score: 0.575)
  • Q5ZE07 (score: 0.411)
  • Q5ZE00 (score: 0.354)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YMR058W (score: 1.000; bootstrap: 100%)
  • YFL041W (score: 0.406)
  • YDR506C (score: 0.095)

From Inparanoid:20070104

Shigella flexneri

YACK

From SHIGELLACYC

E. coli O157

YACK

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF07732

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Notes

Links

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Name URL Comments
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References

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Categories

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