Help:Gbrowse: Difference between revisions
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imported>DSiegele New page: To direct Gbrowse to a particular region of the chromosome, type a gene name or nucleotide range in the '''Landmark or Region''' box located near the top left of the page. To enter a nucle... |
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To direct Gbrowse to a particular region of the chromosome, type a gene name or nucleotide range in the '''Landmark or Region''' box located near the top left of the page. To enter a nucleotide range, type: MG16655:xx..xx. Where xx indicate the nucleotide positions. | To direct Gbrowse to a particular region of the chromosome, type a gene name, a short sequence (minimum of 15 bp), or a nucleotide range in the '''Landmark or Region''' box located near the top left of the page and click on the '''Search''' button. See the image below. | ||
[[Image:Gbrowse_top.jpg|thumb|center|600px]] | |||
To enter a nucleotide range, type: MG16655:xx..xx. Where xx indicate the nucleotide positions. | |||
The default entry point for this installation of Gbrowse is the ''E. coli'' K-12 MG1655 genome. However, it can display other genomes, including those of ''E. coli'' K-12 W3110, conjugative plasmids F and R100, and a number of bacteriophage. To access one of these other genomes, choose from the scroll down menu in the '''Data Source''' box. | The default entry point for this installation of Gbrowse is the ''E. coli'' K-12 MG1655 genome. However, it can display other genomes, including those of ''E. coli'' K-12 W3110, conjugative plasmids F and R100, and a number of bacteriophage. To access one of these other genomes, choose from the scroll down menu in the '''Data Source''' box. | ||
Revision as of 15:28, 30 July 2007
To direct Gbrowse to a particular region of the chromosome, type a gene name, a short sequence (minimum of 15 bp), or a nucleotide range in the Landmark or Region box located near the top left of the page and click on the Search button. See the image below.
To enter a nucleotide range, type: MG16655:xx..xx. Where xx indicate the nucleotide positions.
The default entry point for this installation of Gbrowse is the E. coli K-12 MG1655 genome. However, it can display other genomes, including those of E. coli K-12 W3110, conjugative plasmids F and R100, and a number of bacteriophage. To access one of these other genomes, choose from the scroll down menu in the Data Source box.