GenExpDB

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GenExpDB
Who:	Tyrrell Conway, OU
What:	E. coli Gene Expression Database
Where:	GenExpDB
Updates	Incremental, as site is modified with data and applications
Upcoming events	link to event calendar, if applicable
Web Services

About GenExpDB

The University of Oklahoma Bioinformatics Core hosts the E. coli Gene Expression Database. EcoliGenExpDB was designed from the biologist’s perspective, with a tool box-style, integrated and interactive display interface and a simplified warehouse architecture, for analyzing a large and growing body of over 1200 multiplatform microarray experiments (currently 132 public) and 450 mouse intestinal colonization assays (curently 23 public) for the model organism Escherichia coli.

Using GenExpDB

Usage examples

Add links to additional pages describing success stories here.

Discussion

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References

A DB-specific article has not yet been published.
Several papers published by the Conway laboratory reference data on EcoliGenExpDB, including:

• Traxler, M. F., D.-E. Chang, and T. Conway. 2006. Guanosine 5’,3’-bispyrophosphate coordinates global gene expression during glucose-lactose diauxie in Escherichia coli. Proc. Nat. Acad. Sci. 103: 2374-2379.
  
• Chang, D.E., D. Smalley, D. L. Tucker, M. P. Leatham, W. E. Norris, S. J. Stevenson, A. B. Anderson, J. E. Grissom, D. C. Laux, P. S. Cohen, and T. Conway. Carbon nutrition of Escherichia coli in the mouse intestine. 2004. Proc. Nat. Acad. Sci. 101: 7427–7432.

External Links

GenExpDB

Discussion of GenExpDB on other websites

Metalinks from external sites to microarray data EcoliGenExpDB

Using syntax http://chase.ou.edu/oubcf/ecoli/searchlink.php?bnum="b_number"

• EcoCyc
• EcoGene
• RegulonDB

Links out

• ASAP
• ColiBase
• Colibri
• EchoBase
• EcoCyc
• EcoGene
• GenoBase
• KEGG
• NCBI
• RegulonDB
• SwissProt